Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   AVAEIV_RS03245 Genome accession   NZ_CP092752
Coordinates   654643..657477 (-) Length   944 a.a.
NCBI ID   WP_012699328.1    Uniprot ID   C1DKP0
Organism   Azotobacter vinelandii strain AEIV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 649643..662477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS03210 (AVAEIV_000642) secY 649908..651236 (+) 1329 WP_041806896.1 preprotein translocase subunit SecY -
  AVAEIV_RS03215 (AVAEIV_000643) rpmJ 651265..651381 (+) 117 WP_012699323.1 50S ribosomal protein L36 -
  AVAEIV_RS03220 (AVAEIV_000644) rpsM 651515..651871 (+) 357 WP_012699324.1 30S ribosomal protein S13 -
  AVAEIV_RS03225 (AVAEIV_000645) rpsK 651902..652291 (+) 390 WP_003093689.1 30S ribosomal protein S11 -
  AVAEIV_RS03230 (AVAEIV_000646) rpsD 652308..652928 (+) 621 WP_012699325.1 30S ribosomal protein S4 -
  AVAEIV_RS03235 (AVAEIV_000647) - 652951..653952 (+) 1002 WP_012699326.1 DNA-directed RNA polymerase subunit alpha -
  AVAEIV_RS03240 (AVAEIV_000648) rplQ 653997..654389 (+) 393 WP_012699327.1 50S ribosomal protein L17 -
  AVAEIV_RS03245 (AVAEIV_000649) uvrA 654643..657477 (-) 2835 WP_012699328.1 excinuclease ABC subunit UvrA Machinery gene
  AVAEIV_RS03250 (AVAEIV_000650) - 657610..658998 (+) 1389 WP_012699329.1 MFS transporter -
  AVAEIV_RS03255 (AVAEIV_000651) ssb 659008..659511 (+) 504 WP_012699330.1 single-stranded DNA-binding protein Machinery gene
  AVAEIV_RS03260 (AVAEIV_000652) - 659583..660482 (-) 900 WP_012699331.1 LysR family transcriptional regulator -
  AVAEIV_RS03265 (AVAEIV_000653) - 660614..661351 (+) 738 WP_012699332.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 944 a.a.        Molecular weight: 104098.89 Da        Isoelectric Point: 6.9573

>NTDB_id=568091 AVAEIV_RS03245 WP_012699328.1 654643..657477(-) (uvrA) [Azotobacter vinelandii strain AEIV]
MDKILIRGARTHNLKNIDLTLPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSMMEKPDVDAIEGLS
PAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGTPRCPEHDVPLEAQTVSQMVDQVLALPESSKLMLLAPVVRERKG
EHLSIFEELRAQGFVRARVDGRLFELDELPKLDKQKKHSIDVVVDRFKVRDDLQQRLAESFETALKLADGIALVVPMEGE
TGDELIFSARFACPHCGHSIGELEPKLFSFNNPAGACPSCDGLGVKQYFDPRRLVNGKLSLAEGAIRGWDRRNVYYFQML
GSLAAHYGFSLEEPFENLPASVQKALLHGSGRESIEFRYLNDRGDIVVRAHPFEGIISNLERRYRETESASVREELAKLL
SSQPCPDCRGTRLRREARHVWVGEKTLPAVTALPVGEACGYFAGLSLSGRRGEIAGKILKEIRERLQFLVNVGLDYLTLD
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNERLLATLTHLRNLGNTVIVVEHDEDAIRLADYLVDIG
PGAGVHGGQIVAEGAPAEVMAHPDSLTGKYLSGRLKIEVPAARTPRDVKRLLKLKGARGNNLQNVDLEIPVGLFTCITGV
SGSGKSTLINNTLFPLTAMALNGSSGLETAPHDSFDGLQHLDKVVDIDQSPIGRTPRSNPATYTGLFTPIRELFAGVPES
RSRGYNPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDIYVPCDVCRGKRYNRETLEVKYKGKNIHEVLEMTIEEARDFFD
AVPAIARKLQTLIDVGLSYIRLGQSATTLSGGEAQRVKLSRELSKRDTGKTLYILDEPTTGLHFADIQQLLDVLHRLRDH
GNTVVVIEHNLDVIKTADWIVDLGPEGGSRGGRIIAVGTPEQVAQMPQSHTGRFLAPLLERDRA

Nucleotide


Download         Length: 2835 bp        

>NTDB_id=568091 AVAEIV_RS03245 WP_012699328.1 654643..657477(-) (uvrA) [Azotobacter vinelandii strain AEIV]
TTGGACAAGATCCTGATCCGTGGGGCGCGCACCCACAACCTGAAGAACATCGACCTGACCCTGCCGCGCGACAAACTGAT
CGTTATCACCGGCCTGTCCGGTTCCGGCAAATCCTCGCTGGCCTTCGACACCCTCTATGCCGAAGGCCAGCGCCGCTACG
TGGAGTCCCTCTCGGCCTACGCCCGGCAATTCCTGTCGATGATGGAAAAGCCCGATGTCGACGCCATCGAGGGTCTTTCG
CCGGCGATTTCCATCGAGCAGAAATCGACTTCGCACAACCCGCGCTCCACCGTCGGCACCATTACCGAGATCTACGACTA
CCTGCGCCTGCTCTACGCGCGTGTCGGCACCCCACGCTGCCCGGAACACGACGTGCCGCTGGAAGCGCAGACCGTCAGCC
AGATGGTCGACCAGGTGCTCGCGCTGCCGGAAAGCAGCAAGCTGATGCTATTGGCCCCGGTGGTCCGCGAGCGCAAGGGT
GAACACCTCTCGATCTTCGAGGAGTTGCGTGCCCAGGGGTTCGTCCGCGCACGAGTCGACGGCAGGCTTTTCGAACTGGA
CGAGTTGCCCAAGCTGGACAAGCAGAAGAAGCACAGCATCGACGTGGTGGTGGATCGCTTCAAGGTACGCGACGACTTGC
AGCAGCGCCTGGCCGAGTCCTTCGAGACCGCGCTGAAGCTGGCCGACGGCATCGCCCTGGTGGTACCGATGGAGGGCGAG
ACGGGCGACGAGTTGATCTTCTCCGCACGCTTCGCCTGCCCCCACTGCGGACACTCGATCGGCGAGCTGGAGCCCAAGCT
GTTCTCCTTCAATAACCCGGCCGGCGCCTGCCCCTCCTGCGACGGCCTTGGCGTCAAGCAGTACTTCGACCCGCGCCGGC
TGGTCAACGGCAAGCTGTCTCTCGCCGAGGGCGCGATCCGCGGCTGGGACAGGCGCAACGTCTACTATTTCCAGATGCTC
GGTTCGCTGGCCGCACACTACGGCTTCAGCCTCGAAGAGCCGTTCGAGAACCTGCCGGCCAGCGTGCAGAAGGCCCTGTT
GCACGGCAGCGGCCGCGAGAGCATCGAGTTCCGCTATCTCAACGACCGCGGCGACATCGTGGTCCGGGCCCATCCGTTCG
AGGGCATCATTTCCAACCTGGAACGCCGCTACCGCGAAACCGAATCCGCCAGCGTGCGCGAGGAACTGGCCAAGCTGCTC
AGCAGCCAGCCCTGCCCCGACTGCCGCGGCACCCGCCTGCGCCGCGAGGCGCGGCACGTCTGGGTCGGCGAAAAGACCCT
GCCGGCGGTCACCGCCCTGCCGGTGGGTGAAGCCTGTGGCTATTTCGCCGGCTTGTCGCTGAGCGGTCGACGCGGCGAGA
TCGCCGGGAAGATCCTCAAGGAGATCCGCGAGCGCTTGCAGTTTCTGGTCAACGTCGGCCTCGACTACCTGACTCTGGAT
CGCAGCGCCGATACCCTTTCCGGCGGCGAGGCGCAGCGCATCCGCCTGGCCAGCCAGATCGGCGCCGGCCTGGTCGGGGT
GATGTACATCCTCGACGAGCCTTCCATCGGTCTGCACCAGCGCGATAACGAGCGCCTGCTGGCTACCCTCACCCACCTGC
GCAACCTGGGCAACACAGTGATCGTGGTGGAGCACGACGAGGATGCCATCCGCCTGGCCGACTATCTGGTCGACATCGGC
CCGGGCGCCGGCGTGCACGGTGGGCAAATCGTCGCCGAGGGTGCACCGGCCGAGGTGATGGCCCATCCCGACTCGTTGAC
CGGCAAATACCTCTCCGGCCGCCTGAAGATCGAAGTTCCGGCCGCACGCACCCCGCGCGATGTCAAACGGCTCCTCAAGC
TCAAGGGGGCCCGCGGCAACAACCTGCAGAATGTCGACCTGGAGATCCCGGTGGGCCTGTTCACCTGCATCACCGGAGTG
TCCGGGTCGGGCAAGTCGACCCTGATCAACAACACCCTGTTTCCTCTCACCGCCATGGCGCTGAACGGCAGCAGTGGTCT
GGAAACCGCCCCCCACGACAGCTTCGACGGCTTGCAGCACCTGGACAAGGTGGTCGACATCGACCAGAGCCCGATTGGCA
GAACGCCACGCTCGAACCCGGCGACCTACACCGGACTGTTCACCCCCATCCGCGAACTGTTCGCCGGTGTGCCGGAGTCA
CGCTCGCGCGGCTACAACCCCGGGCGCTTTTCCTTCAACGTCAAGGGCGGTCGCTGCGAGGCTTGCCAGGGCGACGGCGT
GATCAAGGTGGAGATGCATTTTCTGCCGGACATCTACGTTCCCTGCGACGTCTGCAGGGGCAAGCGCTACAACCGCGAAA
CGCTCGAGGTGAAGTACAAGGGCAAGAACATCCACGAAGTGCTGGAGATGACCATCGAGGAAGCCCGCGACTTCTTCGAT
GCCGTACCGGCGATAGCGCGCAAGCTGCAGACGCTCATCGACGTCGGCCTCTCCTACATTCGCCTGGGCCAGAGCGCCAC
GACCCTGTCCGGCGGCGAGGCGCAGCGGGTCAAGCTGAGCCGCGAACTGTCGAAACGGGATACCGGCAAGACCCTGTACA
TCCTCGACGAGCCCACCACGGGCCTGCACTTCGCCGATATCCAGCAACTCCTGGACGTACTGCATCGACTGCGCGACCAC
GGCAACACCGTGGTGGTGATCGAGCACAACCTGGATGTGATCAAGACCGCCGACTGGATCGTCGACCTGGGCCCCGAAGG
CGGCTCGCGGGGCGGCCGGATCATCGCCGTCGGCACGCCCGAGCAGGTCGCGCAGATGCCGCAATCGCACACCGGACGCT
TCCTCGCGCCCCTGCTGGAGCGCGATCGCGCCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)

UvrA interaction domain (UvrA_inter)

(130-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C1DKP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

57.721

99.47

0.574
  uvrA Streptococcus pneumoniae TIGR4

57.721

99.47

0.574
  uvrA Streptococcus pneumoniae D39

57.721

99.47

0.574