Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   AVAEIV_RS02775 Genome accession   NZ_CP092752
Coordinates   567806..569803 (+) Length   665 a.a.
NCBI ID   WP_302228090.1    Uniprot ID   -
Organism   Azotobacter vinelandii strain AEIV     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562806..574803
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVAEIV_RS02760 (AVAEIV_000552) - 563084..564982 (-) 1899 WP_302228087.1 beta-ketoacyl synthase -
  AVAEIV_RS02765 (AVAEIV_000553) metK 565292..566482 (-) 1191 WP_302228088.1 methionine adenosyltransferase -
  AVAEIV_RS02770 (AVAEIV_000554) - 566542..567552 (-) 1011 WP_302228089.1 ArsR/SmtB family transcription factor -
  AVAEIV_RS02775 (AVAEIV_000555) recP/tkt 567806..569803 (+) 1998 WP_302228090.1 transketolase Machinery gene
  AVAEIV_RS02780 (AVAEIV_000556) epd 569924..570970 (+) 1047 WP_012699239.1 erythrose-4-phosphate dehydrogenase -
  AVAEIV_RS02785 (AVAEIV_000557) - 571003..572163 (+) 1161 WP_012699240.1 phosphoglycerate kinase -
  AVAEIV_RS02790 (AVAEIV_000558) fba 572389..573453 (+) 1065 WP_061288718.1 class II fructose-bisphosphate aldolase -
  AVAEIV_RS02795 (AVAEIV_000559) - 573499..573966 (-) 468 WP_061288716.1 heme-degrading domain-containing protein -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 71849.15 Da        Isoelectric Point: 5.8074

>NTDB_id=568090 AVAEIV_RS02775 WP_302228090.1 567806..569803(+) (recP/tkt) [Azotobacter vinelandii strain AEIV]
MPSRRERANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWHDYLRHNPANPQWADRDRFVLSNGHGSMLVYSLLHLTGY
DLSIDDLKNFRQFGSRTPGHPEYGYTPGVETTTGPLGQGLANAVGMAVAEKVLAAQFNRPGQRIVDHYTYVFLGDGCLME
GISHEVCSLAGTLGLNKLVAFYDDNGISIDGEVEGWFTDDTPARFEAYGWLVIRNVDGHDADEIRTAIETARKSERPVLI
CCKTVIGFGSPNKQGKEACHGAALGAEEIALTRDVLGWKHGPFEIPAEIYAGWDARAAGAARETEWNRRFAAYQAEFPEL
AAEFLRRSRGELPADFAAKAGEYIAEIAAKGETIASRKASQNALNAFGPLLPEFLGGSADLAGSNLTLWKGCKALAADDA
SGNYLHYGVREFGMSAIMNGIALHGGFIPYGATFLVFMEYACNAVRMAALMKQRVLFVYTHDSIGLGEDGPTHQPVEQLA
SLRSTPNLDTWRPCDAVESAVAWKCAIERQDGPSALVFSRQNLPHQARDARQLADIARGGYVLRDCAGTPELILIATGSE
VALAVQAHETLSGQGRRVRVVSMPSTSVFDRQDAAWKQAVLPSGVGARIAIEAAHADFWYKYVGLAGRIVGMTRFGESAP
AGALFEHFGFTLDNLLASAGELLGD

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=568090 AVAEIV_RS02775 WP_302228090.1 567806..569803(+) (recP/tkt) [Azotobacter vinelandii strain AEIV]
ATGCCCAGCCGTCGTGAGCGAGCCAATGCCATTCGTGCCCTGAGTATGGATGCCGTGCAGAAAGCCAACAGTGGCCATCC
TGGCGCCCCCATGGGCATGGCGGATATCGCCGAAGTGCTGTGGCACGACTATCTCAGGCACAACCCGGCCAATCCGCAAT
GGGCCGACCGCGACCGCTTCGTGCTCTCCAACGGCCATGGCTCGATGCTGGTCTATTCGCTGCTGCATCTGACCGGCTAC
GACCTCTCGATCGACGACCTGAAGAACTTCCGCCAGTTCGGCAGCCGCACCCCCGGCCATCCCGAATACGGCTATACCCC
CGGCGTCGAGACCACCACTGGCCCGCTCGGCCAGGGCCTGGCCAACGCCGTCGGCATGGCCGTGGCGGAGAAGGTGCTGG
CCGCGCAGTTCAACCGGCCCGGGCAGCGCATCGTCGATCATTACACCTACGTGTTCCTCGGCGACGGCTGCCTGATGGAA
GGCATCTCCCACGAAGTCTGCTCGCTGGCCGGCACCCTGGGGCTGAACAAGCTGGTCGCCTTCTACGACGACAACGGCAT
CTCCATCGACGGCGAGGTCGAGGGCTGGTTCACCGACGACACCCCGGCGCGCTTCGAGGCCTACGGCTGGCTGGTGATCC
GCAACGTCGACGGCCACGACGCCGACGAGATCCGGACCGCGATCGAGACCGCGCGCAAGAGCGAGCGCCCGGTCCTGATC
TGCTGCAAGACGGTGATCGGCTTCGGTTCGCCGAACAAGCAGGGCAAGGAAGCCTGCCACGGCGCCGCGCTGGGGGCCGA
GGAAATCGCCCTGACCCGTGACGTGCTGGGCTGGAAGCACGGGCCATTCGAGATTCCCGCCGAGATCTACGCCGGCTGGG
ACGCCAGGGCCGCCGGCGCCGCCCGCGAGACCGAATGGAACCGGCGCTTCGCCGCCTACCAGGCCGAGTTCCCGGAACTG
GCCGCGGAGTTCCTGCGCCGCAGCCGTGGCGAACTGCCCGCCGATTTCGCCGCGAAGGCCGGCGAATACATCGCCGAAAT
CGCCGCCAAGGGGGAAACCATCGCCAGCCGCAAGGCCAGCCAGAACGCGCTGAACGCCTTCGGCCCGCTGCTGCCGGAGT
TCCTCGGCGGCTCGGCGGACCTGGCCGGTTCCAACCTGACCCTGTGGAAGGGCTGCAAGGCGCTCGCGGCGGACGACGCC
TCCGGTAACTACCTGCACTACGGCGTGCGCGAGTTCGGCATGAGCGCGATCATGAACGGTATCGCTCTGCACGGCGGCTT
CATTCCCTACGGCGCCACCTTCCTGGTGTTCATGGAGTACGCCTGCAACGCCGTGCGCATGGCCGCGCTGATGAAGCAGC
GCGTGCTGTTCGTCTACACCCACGACTCCATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTCGAGCAACTGGCC
AGCCTGCGCAGCACGCCGAACCTCGACACCTGGCGCCCGTGCGACGCGGTGGAGTCGGCGGTGGCCTGGAAATGCGCCAT
CGAGCGCCAGGACGGCCCGAGCGCCCTGGTGTTCAGCCGCCAGAACCTGCCGCACCAGGCGCGCGATGCCCGGCAACTGG
CCGATATCGCCCGCGGCGGCTACGTGCTCCGCGATTGTGCCGGCACCCCGGAGCTGATCCTCATCGCCACCGGTTCGGAG
GTCGCCCTGGCGGTGCAGGCCCACGAGACGCTGAGCGGGCAGGGCCGCCGGGTGCGAGTGGTTTCCATGCCCTCGACCAG
CGTGTTCGATCGCCAGGACGCCGCCTGGAAACAGGCCGTGCTGCCGTCCGGGGTCGGGGCGCGGATCGCCATCGAGGCCG
CCCACGCCGACTTCTGGTACAAGTACGTCGGGCTGGCTGGACGCATCGTCGGCATGACCCGCTTCGGCGAGTCCGCGCCG
GCCGGCGCGCTCTTCGAGCATTTCGGCTTCACCCTCGACAACCTGCTGGCCAGCGCCGGGGAACTGCTCGGGGACTGA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(540-654)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(5-333)

Transketolase, pyrimidine binding domain (Transket_pyr)

(353-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

48.485

99.248

0.481