Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   MK801_RS11490 Genome accession   NZ_CP092748
Coordinates   2288551..2292162 (-) Length   1203 a.a.
NCBI ID   WP_057719905.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2283551..2297162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS11465 (MK801_11460) - 2284236..2285570 (-) 1335 WP_251901039.1 trypsin-like serine protease -
  MK801_RS11470 (MK801_11465) - 2285916..2286239 (-) 324 WP_015425598.1 helix-turn-helix domain-containing protein -
  MK801_RS11475 (MK801_11470) ychF 2286351..2287466 (-) 1116 WP_015425597.1 redox-regulated ATPase YchF -
  MK801_RS11480 (MK801_11475) - 2287747..2288304 (+) 558 WP_254255565.1 helix-turn-helix domain-containing protein -
  MK801_RS11485 (MK801_11480) - 2288314..2288514 (-) 201 WP_003132155.1 DUF951 domain-containing protein -
  MK801_RS11490 (MK801_11485) rexA 2288551..2292162 (-) 3612 WP_057719905.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  MK801_RS11495 (MK801_11490) rexB 2292155..2295454 (-) 3300 WP_254255566.1 ATP-dependent nuclease subunit B -
  MK801_RS11500 (MK801_11495) dnaN 2295560..2296702 (-) 1143 WP_128267411.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 1203 a.a.        Molecular weight: 138711.66 Da        Isoelectric Point: 4.8862

>NTDB_id=568078 MK801_RS11490 WP_057719905.1 2288551..2292162(-) (rexA) [Lactococcus lactis strain 17M1]
MSEVKLTPEQNEAIHSSGKNILVSASAGSGKTFVMAQRIVEKVKQGIEIDRLFISTFTKKAASELRMRLERDLKKARQES
SDENQARRLTLALHNLSNADIGTMDSFTQKLTKTNFNRVNIDPNFRILADQTESDLIRQEVFEQLVESYLSGDEGLNVSK
EKFEELIKNFSKDRNIAGFQKVVYTTYRFASATENPIKWLENQFLKGFETYKSLTDLSADFSADIKENLLIFFELLETSL
TNGVIAKKGAGRDKANLILDNKNELLEAITTKDFATFTELFLSIDTDIRVGSSKDEILSALKKDFSAQKQDLVGSKSKPG
EIRKFVDKIKHGQLIEKYQNQAFEIAENLQKFVIEFYQSYLERKKNENAFEYSDIAHFAIEILEENPDIRETLREHYDEI
MIDEYQDTSHTQERMLELLSNGHNLFMVGDIKQSIYGFRLADPGLFLEKYKDYAKTENPNQLIRLKENFRSRGEVLTFTN
DIFKHLMDEKLGEMTYGKEEALVQGNITDYPVESEKDFYPELLLYKENTSDEETDESEVRISDGEIKGAAQEIKELIEAG
VEPKDIAILVRSKSNNNKIEDILLSYDIPVVLDEGRVDFLKSMEVLIMLDVLRAIDNPLYDLSLVAMLRSPLFGFNEDEL
TRISTQGSHDLRFWDKILLSLNKEGQNPELINPSLEDKLKAFYKKFTEWRKLVNQVAIHDLLWKIYTETYYFDYVGALKN
GEMRQANLQALAVRAESYESSGYKGLFKFVRLINKFMEQNNDLASVNIKLPQNAVRVMTFHKSKGLEFDYVFLMNLQSRF
NDRDLKEDVILSRENGLGMKLIADLKDEADVITDFPYALVKMETFPYMVNKDLKQRAALSEEMRVLYVAFTRAKKKLYLV
GKIKETDKKSGLDLYDNASLEGKILEDKFRNSSRGFQHWILALQNATKLPMKLNVYTKEELEAEKLEFTSQPDFKKLVEE
SEKFDNIMAYSDEIQKAQKIMNYEYPNQAATELSSIQTPSQVKKRSYEKQLQVGEIQPISEFTRVKKLDFSDFGPKKVTA
AEIGSATHSFMQYADFSQADLFSFQATLDEMGFDEKIKNQIDIAKILTLFDTDFGQFLSENVDKTVKEAPFSMLRTDEFA
KEQYIVRGICDGFVKLTDKIVLFDYKTDRFTSSSAISEIKERYRDQMNLYSEALKKAYDVNQVDKYLILLGGPQQVFVEK
LDD

Nucleotide


Download         Length: 3612 bp        

>NTDB_id=568078 MK801_RS11490 WP_057719905.1 2288551..2292162(-) (rexA) [Lactococcus lactis strain 17M1]
ATGAGTGAAGTAAAATTAACTCCAGAGCAAAATGAAGCCATTCATAGTTCTGGTAAGAATATTCTAGTTTCAGCGAGTGC
TGGTTCCGGAAAAACTTTTGTTATGGCTCAGAGAATTGTCGAGAAAGTCAAACAAGGAATTGAAATTGATCGACTTTTCA
TTTCCACATTTACAAAAAAAGCAGCAAGCGAATTACGGATGCGGCTTGAGCGAGATTTAAAAAAAGCCAGACAAGAAAGT
TCTGATGAAAATCAAGCTCGTAGGTTGACACTTGCTTTACATAACTTGTCAAATGCTGATATTGGAACTATGGATAGTTT
CACCCAAAAATTGACAAAAACGAATTTCAATCGAGTAAATATTGACCCGAATTTCCGAATCTTAGCTGATCAAACAGAGA
GTGATTTAATTAGACAAGAAGTTTTTGAACAATTGGTTGAGTCTTATCTATCAGGAGATGAAGGATTGAATGTTTCAAAA
GAAAAATTTGAAGAACTTATAAAAAATTTTTCTAAAGACAGAAATATTGCTGGTTTTCAAAAAGTGGTTTACACTACTTA
CCGTTTTGCATCAGCAACTGAAAATCCAATAAAGTGGTTAGAAAATCAATTTTTAAAAGGTTTTGAAACATATAAATCAC
TGACAGACTTGTCTGCAGATTTTTCAGCAGATATAAAAGAGAATTTACTGATATTTTTTGAACTTCTAGAAACTTCATTA
ACCAATGGAGTAATTGCTAAAAAAGGGGCTGGACGTGATAAGGCCAACCTTATTTTAGATAATAAAAATGAACTCTTAGA
AGCAATAACCACTAAAGATTTTGCAACTTTCACAGAACTATTTTTATCAATAGATACAGATATTCGAGTGGGTTCTTCAA
AAGATGAAATACTTTCGGCTCTGAAAAAAGATTTTTCAGCACAAAAGCAAGACTTAGTCGGCTCGAAATCCAAACCTGGA
GAAATTCGGAAGTTTGTTGATAAAATAAAACATGGTCAGTTGATTGAAAAATATCAAAATCAAGCATTTGAAATCGCAGA
AAATTTACAAAAATTTGTTATTGAGTTTTACCAAAGTTATTTAGAACGTAAAAAGAATGAAAATGCTTTTGAGTACTCTG
ATATCGCACACTTTGCCATCGAAATTTTAGAGGAAAATCCAGATATACGTGAAACTTTAAGAGAACATTATGATGAAATC
ATGATTGATGAGTATCAGGATACCAGCCACACTCAGGAGCGAATGCTGGAACTTTTATCGAATGGACATAATCTCTTCAT
GGTTGGTGATATTAAGCAATCAATTTATGGCTTTCGTTTAGCTGACCCTGGCCTCTTTTTAGAAAAATATAAAGACTATG
CCAAGACAGAAAATCCAAATCAATTAATTCGCCTAAAAGAAAACTTTCGTTCACGTGGTGAGGTTTTAACATTTACAAAT
GATATCTTTAAACACCTGATGGATGAAAAATTAGGTGAGATGACTTATGGCAAAGAAGAAGCCTTAGTTCAAGGAAACAT
TACTGATTATCCAGTTGAATCTGAGAAAGATTTTTATCCAGAACTTCTTTTATACAAAGAAAATACAAGTGATGAAGAAA
CAGATGAATCCGAAGTAAGAATTTCGGATGGAGAGATTAAAGGGGCAGCTCAAGAAATAAAAGAATTGATTGAAGCTGGA
GTTGAGCCAAAAGATATAGCAATCTTGGTTCGTTCTAAATCAAATAATAATAAAATTGAGGATATTCTGCTTAGTTACGA
TATTCCGGTCGTTCTTGATGAAGGACGAGTTGATTTTTTGAAATCAATGGAAGTCTTAATTATGCTAGACGTTTTACGAG
CAATTGATAATCCACTCTATGATTTATCATTGGTTGCGATGTTAAGGTCTCCGTTATTTGGATTTAATGAAGATGAATTA
ACGAGAATCAGTACTCAAGGAAGCCATGACCTTCGATTTTGGGATAAAATTCTTTTGTCACTTAATAAAGAAGGACAAAA
TCCAGAACTTATCAATCCTTCCTTAGAGGACAAGCTTAAAGCATTTTATAAGAAGTTTACAGAGTGGCGTAAACTTGTAA
ACCAAGTTGCAATTCATGATTTACTTTGGAAAATATATACAGAAACCTACTATTTTGACTATGTTGGTGCCTTAAAAAAT
GGTGAAATGCGTCAAGCGAACTTACAAGCCTTAGCGGTTCGAGCAGAATCATATGAAAGTTCTGGTTATAAAGGATTATT
TAAATTTGTAAGATTAATCAACAAATTTATGGAACAAAATAATGATTTAGCTTCTGTTAATATAAAACTTCCTCAAAATG
CTGTTCGAGTGATGACCTTCCATAAATCAAAAGGATTAGAATTTGATTATGTCTTTTTAATGAATTTACAATCTCGTTTC
AACGATCGTGATTTGAAAGAAGATGTTATCCTAAGTCGTGAAAATGGTTTAGGAATGAAGCTTATTGCCGATTTAAAGGA
TGAAGCAGATGTTATAACTGATTTCCCTTATGCTTTAGTGAAAATGGAAACATTCCCTTATATGGTGAATAAAGACTTAA
AACAAAGAGCAGCTCTCTCAGAAGAAATGCGTGTTTTATATGTTGCATTTACAAGAGCAAAGAAAAAACTTTATCTTGTC
GGAAAAATAAAAGAAACGGATAAAAAATCAGGACTTGACCTTTACGATAATGCAAGTTTAGAAGGAAAGATTTTAGAAGA
TAAATTTCGTAATTCAAGTCGCGGTTTTCAACACTGGATATTGGCGCTTCAAAATGCCACAAAACTTCCGATGAAACTCA
ATGTCTACACAAAAGAAGAGTTGGAAGCAGAAAAACTTGAATTTACAAGTCAACCTGATTTCAAAAAATTGGTCGAAGAA
TCGGAAAAATTTGATAATATCATGGCCTATTCTGATGAAATACAAAAAGCTCAAAAAATTATGAATTATGAATATCCAAA
TCAAGCAGCAACAGAGCTTTCAAGTATTCAAACACCAAGTCAGGTTAAAAAACGAAGCTATGAAAAACAATTACAAGTGG
GTGAAATTCAACCGATAAGTGAATTTACTCGGGTCAAAAAGCTAGATTTTTCTGATTTTGGTCCTAAGAAAGTTACTGCT
GCAGAAATCGGTTCGGCAACACATAGTTTTATGCAGTATGCAGATTTTTCTCAAGCAGATTTATTTAGTTTTCAAGCGAC
ACTTGATGAAATGGGATTTGATGAAAAAATAAAAAATCAAATTGATATTGCTAAAATTTTGACTTTGTTTGATACAGATT
TCGGTCAGTTTTTATCAGAAAATGTTGATAAAACAGTTAAAGAAGCACCATTTTCAATGTTGAGAACAGATGAATTTGCT
AAAGAGCAGTATATTGTTCGGGGAATTTGTGATGGATTTGTTAAACTTACTGATAAAATCGTTCTATTTGATTATAAGAC
AGATAGATTTACAAGTTCTTCAGCTATTTCTGAAATAAAAGAGCGTTATAGAGATCAGATGAATCTTTATAGTGAGGCTT
TGAAAAAAGCCTACGATGTCAACCAAGTTGACAAGTATCTCATTTTATTAGGAGGCCCTCAGCAAGTTTTTGTTGAAAAA
CTAGATGATTAG

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(6-453)

UvrD-like helicase C-terminal domain (UvrD_C)

(463-879)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

41.337

100

0.416