Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MK801_RS11305 Genome accession   NZ_CP092748
Coordinates   2258148..2258903 (-) Length   251 a.a.
NCBI ID   WP_015425615.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2253148..2263903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS11285 (MK801_11280) - 2253616..2254596 (+) 981 WP_254255562.1 alpha-ketoacid dehydrogenase subunit beta -
  MK801_RS11290 (MK801_11285) - 2254589..2256178 (+) 1590 WP_254255563.1 2-oxo acid dehydrogenase subunit E2 -
  MK801_RS11295 (MK801_11290) lpdA 2256372..2257790 (+) 1419 WP_010905074.1 dihydrolipoyl dehydrogenase -
  MK801_RS11300 (MK801_11295) - 2257861..2258034 (-) 174 WP_223247194.1 helix-turn-helix transcriptional regulator -
  MK801_RS11305 (MK801_11300) recO 2258148..2258903 (-) 756 WP_015425615.1 DNA repair protein RecO Machinery gene
  MK801_RS11310 (MK801_11305) - 2259002..2260177 (-) 1176 WP_128267421.1 pyridoxal phosphate-dependent aminotransferase -
  MK801_RS11320 (MK801_11315) - 2260642..2261163 (-) 522 WP_057719883.1 GNAT family N-acetyltransferase -
  MK801_RS11325 (MK801_11320) - 2261373..2262995 (+) 1623 WP_128267420.1 SulP family inorganic anion transporter -
  MK801_RS11330 (MK801_11325) - 2263076..2263318 (-) 243 WP_012896919.1 TM2 domain-containing protein -
  MK801_RS11335 (MK801_11330) - 2263379..2263843 (-) 465 WP_057719887.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 28716.89 Da        Isoelectric Point: 5.9537

>NTDB_id=568077 MK801_RS11305 WP_015425615.1 2258148..2258903(-) (recO) [Lactococcus lactis strain 17M1]
MRDAETQGLVLYSRNYKEKDKLVKIFTESFGKRMFFVKNFGKSPYASSLQAFTDGKLTATINDGGFSFIEDVSEVVVYKN
ISSDIFINAHASYIISLADAAISDNQYDPGLYGFLKRSLELLDQGFDMEVVTNIFELQVLHRFGISLNFSECAFCHKNVG
PFDFSYKFSGCLCPQHFDEDLRRSHLDPNVIYLVNLFQEISLDELKKISIKADMKLKIRQFIDGLYDEYVGIHLKSKKFL
DGMSGWADIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=568077 MK801_RS11305 WP_015425615.1 2258148..2258903(-) (recO) [Lactococcus lactis strain 17M1]
ATGCGTGATGCCGAAACTCAAGGTCTAGTGCTTTACAGTCGTAATTACAAAGAAAAAGATAAATTGGTCAAGATTTTTAC
AGAGTCTTTTGGTAAACGGATGTTTTTTGTCAAAAATTTTGGAAAATCCCCTTATGCTAGTTCCTTACAAGCTTTTACTG
ATGGAAAATTGACGGCAACGATTAATGACGGGGGATTTTCTTTTATCGAGGATGTCAGTGAAGTGGTCGTTTATAAAAAT
ATTAGTTCAGATATTTTCATCAATGCTCATGCTTCTTATATCATAAGTTTAGCTGATGCGGCCATTTCTGATAATCAATA
CGACCCAGGGCTTTATGGATTTCTAAAGCGAAGTTTAGAGCTTTTAGATCAAGGATTTGATATGGAAGTCGTGACTAACA
TTTTTGAATTACAAGTTCTTCATCGTTTTGGGATTTCTTTGAACTTCTCAGAATGTGCATTTTGTCATAAAAACGTTGGC
CCCTTTGATTTTTCTTATAAATTTAGTGGCTGCCTTTGTCCCCAACATTTTGATGAAGATTTACGACGAAGTCATCTTGA
CCCAAATGTGATTTATTTGGTCAATCTTTTTCAAGAAATATCTTTAGATGAACTCAAAAAAATCTCGATAAAAGCAGATA
TGAAACTAAAAATTCGTCAATTTATTGATGGGCTTTATGATGAATATGTCGGAATTCATCTCAAATCCAAAAAATTCTTG
GACGGAATGTCTGGTTGGGCAGATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(83-237)

Recombination protein O N terminal (RecO_N)

(1-72)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

54.472

98.008

0.534