Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   MK801_RS09335 Genome accession   NZ_CP092748
Coordinates   1858119..1858835 (+) Length   238 a.a.
NCBI ID   WP_057719661.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1853119..1863835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS09320 (MK801_09315) - 1853444..1855753 (-) 2310 WP_057719659.1 glycoside hydrolase family 65 protein -
  MK801_RS09325 (MK801_09320) - 1855821..1857386 (-) 1566 WP_017864142.1 PTS transporter subunit EIIC -
  MK801_RS09330 (MK801_09325) - 1857523..1858008 (-) 486 WP_015425865.1 PTS glucose transporter subunit IIA -
  MK801_RS09335 (MK801_09330) treR 1858119..1858835 (+) 717 WP_057719661.1 trehalose operon repressor Regulator
  MK801_RS09340 (MK801_09335) glmM 1858910..1860268 (-) 1359 WP_254255515.1 phosphoglucosamine mutase -
  MK801_RS09345 (MK801_09340) - 1860314..1861273 (-) 960 WP_254255516.1 YbbR-like domain-containing protein -
  MK801_RS09350 (MK801_09345) cdaA 1861263..1862141 (-) 879 WP_023163779.1 diadenylate cyclase CdaA -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.63 Da        Isoelectric Point: 6.4168

>NTDB_id=568063 MK801_RS09335 WP_057719661.1 1858119..1858835(+) (treR) [Lactococcus lactis strain 17M1]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSVNYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDILGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=568063 MK801_RS09335 WP_057719661.1 1858119..1858835(+) (treR) [Lactococcus lactis strain 17M1]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
GAGTGAGAATGAGCTCTCTGTTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCATGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGTTTTGAAAGACTTGAAATTAACCC
TAAACTGTCAGAAACAACTGGTTTTGCCGTTGGGGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATATTCTAGGGCTTGACATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCCCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTCGCTAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-66)

UTRA domain (UTRA)

(89-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462