Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MK801_RS03710 Genome accession   NZ_CP092748
Coordinates   717372..719348 (+) Length   658 a.a.
NCBI ID   WP_254255726.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712372..724348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS03690 (MK801_03690) - 712690..713331 (+) 642 WP_017864827.1 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase -
  MK801_RS03695 (MK801_03695) - 713505..715445 (+) 1941 WP_254255725.1 transcription antiterminator -
  MK801_RS03700 (MK801_03700) - 715447..715746 (+) 300 WP_012898229.1 PTS sugar transporter subunit IIB -
  MK801_RS03705 (MK801_03705) - 715807..717191 (+) 1385 Protein_704 PTS ascorbate transporter subunit IIC -
  MK801_RS03710 (MK801_03710) recP/tkt 717372..719348 (+) 1977 WP_254255726.1 transketolase Machinery gene
  MK801_RS03715 (MK801_03715) - 719443..719697 (+) 255 WP_038601548.1 hypothetical protein -
  MK801_RS03720 (MK801_03720) - 720069..720932 (+) 864 WP_057720035.1 MIP/aquaporin family protein -
  MK801_RS03725 (MK801_03725) - 721027..722103 (+) 1077 WP_057720033.1 aspartate-semialdehyde dehydrogenase -
  MK801_RS03730 (MK801_03730) - 722114..722569 (+) 456 WP_057720032.1 NUDIX hydrolase -
  MK801_RS03735 (MK801_03735) dapA 722913..723806 (+) 894 WP_057720030.1 4-hydroxy-tetrahydrodipicolinate synthase -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 71695.88 Da        Isoelectric Point: 4.8387

>NTDB_id=568037 MK801_RS03710 WP_254255726.1 717372..719348(+) (recP/tkt) [Lactococcus lactis strain 17M1]
MFDTTDQLAVNTIRTLSLDAIQKANSGHPGLPMGSAPMAYVLWSKFLNVNPKTSRKWSNRDRFVLSAGHGSAMLYSLLHL
AGYNVTTDDLKGFRQWQSKTPGHPEVNHTDGVEATTGPLGQGIANAVGMAMAEAHLAAQYNKPGFDIVDHYTYALNGDGD
LMEGVSQEAASLAGKLKLGKLILFYDSNNISLDGDLSMSFIDDIQKRFESYGWQHLLVKDGNDLEEIAAAVEVAKAEKSK
PTIIEVKTVIGFGAEKQGTSAVHGAPLGAEGVAFAKKAYGWDYPEFTVPEEVSKRFLETTVARGEAMEQVWRSTFDDYSE
KYPELAEQYAKAFENETPELTLTKHEMETSKASRVTSQEAIQELSAQMPNLWGGSADLSASNNTMVKVEEDFMPDNYAGR
NIWFGVREFAMGAIMNGIALHGGTRVYGGTFFVFSNYMLPSVRMAALQSLPVTYVWTHDSIAVGEDGPTHEPVEQLASVR
SIPNLDVIRPADGNEVVAAWRRAASSKSRPTALILTRQNLPVLPDTYELAEEGLNRGAYILSKEEGKLEGIIIATGSEVA
LALEAKKTLGSGIRVVSMPSMNIFDEQDAAYREEILPKVVRRRLAIEAGTSYGWGKYVGLDGATVTVDTWGASAPANIVL
PAYGFTAENVVKAYKELD

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=568037 MK801_RS03710 WP_254255726.1 717372..719348(+) (recP/tkt) [Lactococcus lactis strain 17M1]
ATGTTTGATACTACTGATCAATTGGCTGTAAATACGATTCGTACTCTATCATTAGATGCGATTCAAAAAGCAAATTCAGG
ACATCCTGGACTTCCAATGGGCTCTGCACCAATGGCTTATGTACTTTGGAGCAAATTTCTTAATGTGAACCCTAAGACAA
GTCGTAAATGGTCAAATCGTGACCGTTTTGTCTTGTCTGCTGGTCATGGTTCTGCAATGTTATATAGTTTATTACATTTG
GCAGGTTATAATGTAACGACTGATGATTTAAAAGGTTTCCGTCAATGGCAATCAAAAACACCGGGACATCCAGAAGTTAA
TCATACAGATGGTGTTGAAGCAACAACAGGTCCTTTAGGACAAGGAATTGCCAATGCTGTCGGAATGGCAATGGCTGAAG
CACATTTAGCAGCACAATACAATAAACCTGGTTTTGATATTGTTGACCATTACACTTACGCCTTAAATGGTGATGGTGAT
TTGATGGAAGGTGTTTCACAAGAAGCAGCTTCACTTGCAGGTAAATTGAAACTTGGTAAATTGATTCTTTTCTATGATTC
AAATAATATTTCTCTAGATGGTGACTTATCAATGTCATTTATTGATGATATTCAAAAACGTTTTGAATCATATGGCTGGC
AACATTTATTGGTAAAAGATGGAAATGATTTAGAAGAAATCGCAGCAGCTGTTGAAGTGGCTAAAGCTGAAAAATCTAAA
CCAACAATCATTGAAGTTAAAACAGTCATTGGTTTTGGTGCCGAAAAACAAGGAACTTCAGCAGTTCACGGAGCTCCTCT
TGGAGCTGAAGGTGTTGCATTTGCCAAGAAAGCATATGGTTGGGATTACCCTGAATTTACAGTTCCTGAAGAAGTATCAA
AACGCTTTTTAGAAACGACAGTTGCGCGTGGTGAAGCGATGGAGCAAGTATGGCGCAGTACTTTTGATGATTATTCTGAA
AAATACCCTGAGCTTGCTGAGCAGTATGCAAAAGCTTTTGAAAATGAGACACCAGAGCTTACTTTGACCAAGCATGAAAT
GGAAACAAGCAAGGCCAGCCGTGTAACTTCACAAGAAGCTATCCAAGAATTATCAGCTCAAATGCCAAATCTTTGGGGTG
GGTCTGCTGACCTTTCGGCTTCAAATAATACAATGGTTAAAGTTGAAGAAGACTTCATGCCAGATAACTATGCTGGACGT
AATATTTGGTTTGGTGTACGTGAATTTGCAATGGGAGCCATTATGAATGGGATTGCTTTGCATGGTGGAACTCGTGTCTA
TGGCGGAACATTCTTCGTCTTCTCAAACTACATGCTTCCTTCTGTTCGGATGGCTGCTCTACAAAGCTTGCCAGTCACTT
ATGTTTGGACACATGATTCCATTGCTGTTGGTGAAGATGGTCCAACTCACGAACCTGTTGAACAATTAGCTTCTGTTCGC
TCAATTCCTAATTTGGATGTAATTCGTCCAGCTGATGGAAATGAAGTAGTGGCTGCATGGCGTCGTGCTGCATCAAGTAA
AAGCCGCCCAACCGCACTTATTTTGACTCGTCAAAATCTTCCAGTTTTACCTGATACTTATGAATTGGCTGAAGAAGGTC
TGAATCGTGGGGCTTATATTCTTTCCAAAGAAGAAGGAAAACTTGAAGGAATCATCATTGCGACTGGTTCAGAAGTAGCA
TTAGCTCTTGAAGCTAAGAAAACTTTAGGTTCTGGCATTCGTGTCGTTTCAATGCCTTCAATGAATATTTTTGACGAACA
AGACGCAGCTTATCGCGAAGAAATTTTACCAAAAGTTGTAAGACGTCGTTTAGCGATTGAAGCTGGTACAAGTTACGGAT
GGGGTAAATATGTTGGACTTGATGGTGCAACAGTTACAGTAGATACTTGGGGCGCTTCGGCACCAGCAAATATCGTTCTT
CCAGCTTACGGATTTACTGCTGAAAATGTAGTTAAAGCATACAAAGAGCTTGACTAA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-338)

Transketolase, pyrimidine binding domain (Transket_pyr)

(354-521)

Transketolase, C-terminal domain (Transketolase_C)

(551-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

55.405

100

0.561