Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MK801_RS02265 Genome accession   NZ_CP092748
Coordinates   431078..432037 (+) Length   319 a.a.
NCBI ID   WP_014017414.1    Uniprot ID   G1FKZ3
Organism   Lactococcus lactis strain 17M1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 426078..437037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS02235 (MK801_02235) - 426622..427326 (+) 705 WP_057720497.1 HAD family hydrolase -
  MK801_RS02240 (MK801_02240) - 427337..427885 (-) 549 WP_057720496.1 hypothetical protein -
  MK801_RS12025 - 427904..428032 (-) 129 WP_257590494.1 hypothetical protein -
  MK801_RS02245 (MK801_02245) infC 428495..428989 (+) 495 WP_003132354.1 translation initiation factor IF-3 -
  MK801_RS02250 (MK801_02250) rpmI 429118..429318 (+) 201 WP_003132353.1 50S ribosomal protein L35 -
  MK801_RS02255 (MK801_02255) rplT 429480..429839 (+) 360 WP_003132352.1 50S ribosomal protein L20 -
  MK801_RS02260 (MK801_02260) oppD 430065..431081 (+) 1017 WP_254255647.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppD -
  MK801_RS02265 (MK801_02265) amiE 431078..432037 (+) 960 WP_014017414.1 murein tripeptide/oligopeptide ABC transporter ATP-binding protein OppF Regulator
  MK801_RS02270 (MK801_02270) oppB 432018..432977 (+) 960 WP_021722649.1 murein tripeptide/oligopeptide ABC transporter permease OppB -
  MK801_RS02275 (MK801_02275) oppC 432987..433871 (+) 885 WP_254255648.1 murein tripeptide/oligopeptide ABC transporter permease OppC -
  MK801_RS02280 (MK801_02280) - 433977..435774 (+) 1798 Protein_424 oligopeptide ABC transporter substrate-binding protein -
  MK801_RS02285 (MK801_02285) - 435977..436723 (+) 747 WP_057720494.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35985.15 Da        Isoelectric Point: 8.9944

>NTDB_id=568022 MK801_RS02265 WP_014017414.1 431078..432037(+) (amiE) [Lactococcus lactis strain 17M1]
MSEILNLKDLKVYYPIRSGFFNRVTDNVLAVDGVDLTIHEGETVGLVGESGSGKSTIGKTIVGLEQMTSGQLIYKGQDVS
KKKIRNHLKYNKDVQMIFQDAFSSLNPRKTIYDIIAEPIRNFEKLDANTENKRIHELLDIVGLPKQALEQYPFQFSGGQQ
QRIGIARAVATNPKLIVADEPVSALDLSVQAQVLNFMKLIQKDLGIAFLFISHDLGVVRHMTDNIAVMHNGRIVEKGTRR
DIFDEPQHIYTKRLLSAIPSIDVTRRAENRKNRLKVEQDFEDKKANFYDKDGHALPLQKLSESHWAALPKGGENVESNY

Nucleotide


Download         Length: 960 bp        

>NTDB_id=568022 MK801_RS02265 WP_014017414.1 431078..432037(+) (amiE) [Lactococcus lactis strain 17M1]
GTGAGCGAAATTCTTAATTTAAAGGACTTAAAAGTTTATTATCCTATTCGATCTGGTTTCTTTAATCGAGTGACAGATAA
TGTTTTAGCCGTTGATGGAGTAGATTTAACGATTCATGAAGGAGAAACTGTCGGTTTAGTTGGTGAATCTGGCTCTGGAA
AATCAACGATTGGCAAAACAATTGTTGGTTTAGAACAAATGACATCAGGACAATTGATTTACAAAGGACAAGATGTCAGC
AAAAAAAAGATAAGAAACCACCTCAAATACAATAAAGATGTTCAAATGATTTTTCAAGATGCATTTTCGAGTTTGAATCC
ACGGAAAACAATTTACGATATCATTGCGGAGCCTATTCGAAATTTTGAAAAATTAGATGCTAATACAGAAAATAAACGGA
TTCATGAATTATTGGATATTGTTGGACTACCTAAACAAGCTTTAGAACAGTATCCTTTCCAATTTTCTGGAGGTCAACAA
CAAAGAATTGGAATCGCACGGGCAGTTGCTACTAATCCTAAGTTAATTGTGGCAGATGAACCAGTTTCGGCATTAGACTT
ATCTGTTCAAGCTCAGGTTTTGAATTTCATGAAGCTCATTCAAAAAGACTTGGGAATTGCATTTCTTTTTATTTCTCATG
ATTTAGGGGTTGTCCGCCATATGACCGATAATATTGCAGTCATGCACAACGGTCGAATTGTCGAAAAAGGAACACGAAGA
GATATTTTTGATGAGCCACAGCACATTTATACTAAACGGCTCTTATCTGCTATCCCTTCGATTGATGTTACAAGAAGAGC
GGAAAATCGGAAAAACCGTCTAAAAGTTGAACAAGACTTTGAGGATAAAAAAGCAAACTTTTATGATAAAGACGGACACG
CTTTGCCCTTACAAAAATTAAGTGAAAGTCATTGGGCTGCTTTGCCAAAAGGAGGGGAAAATGTGGAAAGTAATTATTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(234-273)

ABC transporter (ABC_tran)

(32-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1FKZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

36.446

100

0.379
  amiF Streptococcus salivarius strain HSISS4

45.833

82.759

0.379
  amiF Streptococcus thermophilus LMD-9

47.059

79.937

0.376
  amiF Streptococcus thermophilus LMG 18311

47.059

79.937

0.376
  amiE Streptococcus thermophilus LMG 18311

35.736

100

0.373
  amiE Streptococcus thermophilus LMD-9

35.736

100

0.373
  oppD Streptococcus mutans UA159

38.742

94.671

0.367