Detailed information    

insolico Bioinformatically predicted

Overview

Name   cclA/cilC   Type   Machinery gene
Locus tag   MK801_RS01225 Genome accession   NZ_CP092748
Coordinates   241613..242278 (-) Length   221 a.a.
NCBI ID   WP_057720372.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 236613..247278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS01205 (MK801_01205) - 237104..238234 (+) 1131 WP_254255606.1 aminotransferase -
  MK801_RS01210 (MK801_01210) - 238426..239919 (+) 1494 WP_015427125.1 basic amino acid/polyamine antiporter -
  MK801_RS01215 (MK801_01215) - 239998..240489 (+) 492 WP_015427124.1 prolyl-tRNA synthetase associated domain-containing protein -
  MK801_RS01220 (MK801_01220) dinB 240568..241662 (+) 1095 WP_057720371.1 DNA polymerase IV -
  MK801_RS01225 (MK801_01225) cclA/cilC 241613..242278 (-) 666 WP_057720372.1 A24 family peptidase Machinery gene
  MK801_RS01230 (MK801_01230) - 242445..242891 (+) 447 WP_004254538.1 DNA starvation/stationary phase protection protein -
  MK801_RS01235 (MK801_01235) - 242973..243359 (-) 387 WP_004254540.1 rhodanese-like domain-containing protein -
  MK801_RS01240 (MK801_01240) - 243362..244333 (-) 972 WP_057720373.1 ROK family glucokinase -
  MK801_RS01245 (MK801_01245) - 244367..244588 (-) 222 WP_057720374.1 YqgQ family protein -
  MK801_RS01250 (MK801_01250) - 244780..245508 (+) 729 WP_057720375.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  MK801_RS01255 (MK801_01255) - 245808..246137 (+) 330 WP_057720376.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 25665.87 Da        Isoelectric Point: 8.6924

>NTDB_id=568013 MK801_RS01225 WP_057720372.1 241613..242278(-) (cclA/cilC) [Lactococcus lactis strain 17M1]
MDILFIFVIGSIFGSFFGLIVDRIPLRKSIIFGRSHCDSCQQLLAYRDLIPIFSQICSGSHCRYCKSKIPYLYVFLEFSS
ALIFVLAWVNYLKPNQFLLIILSLILSAFDYRQHSFPFVIWFIFALSFILIFPLSPLFYFWLILAVLAEKFNLRVGSGDF
LWFFTASFSLTFLNEMLLLQIACSLGIIYYLITKKRAEIAFIPFLTIAYLMFLLGHQILSP

Nucleotide


Download         Length: 666 bp        

>NTDB_id=568013 MK801_RS01225 WP_057720372.1 241613..242278(-) (cclA/cilC) [Lactococcus lactis strain 17M1]
ATGGACATTTTATTTATATTTGTAATTGGAAGTATTTTTGGCTCATTTTTTGGCTTAATAGTTGACCGTATTCCACTAAG
AAAATCAATTATTTTTGGACGCTCACATTGTGATTCTTGTCAGCAACTTTTAGCCTATCGTGATCTAATTCCTATTTTTT
CTCAAATATGTTCTGGCTCACATTGCCGTTATTGTAAAAGTAAAATTCCATATTTATATGTTTTTTTGGAGTTCTCATCA
GCTTTAATTTTTGTTTTAGCTTGGGTAAATTATCTTAAACCTAATCAATTTTTACTGATTATTCTTTCACTAATTTTATC
TGCTTTTGATTATCGTCAGCACAGTTTTCCTTTTGTTATCTGGTTTATTTTTGCACTCAGTTTTATTTTAATATTTCCTC
TTTCTCCCCTTTTCTATTTTTGGCTTATTTTAGCCGTCTTAGCTGAAAAATTCAATTTAAGAGTTGGCAGCGGTGATTTT
TTATGGTTTTTTACCGCTTCATTTTCTCTAACTTTCTTAAACGAAATGCTGCTCCTTCAAATTGCTTGTTCACTTGGTAT
CATTTATTATCTAATCACAAAAAAGCGAGCTGAAATTGCCTTCATCCCGTTTCTAACTATTGCATATCTAATGTTTCTTT
TGGGACACCAAATTCTGTCACCGTAA

Domains

Predicted by InterProScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cclA/cilC Streptococcus mitis SK321

36.986

99.095

0.367