Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   AVFI_RS12910 Genome accession   NZ_CP092712
Coordinates   2812854..2814092 (-) Length   412 a.a.
NCBI ID   WP_012534380.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2807854..2819092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS12880 (AVFI_12880) - 2808020..2808430 (+) 411 WP_005421359.1 flagellar basal body-associated protein FliL -
  AVFI_RS12885 (AVFI_12885) glpG 2808509..2809351 (-) 843 WP_012534343.1 rhomboid family intramembrane serine protease GlpG -
  AVFI_RS12890 (AVFI_12890) glpE 2809358..2809681 (-) 324 WP_012534374.1 thiosulfate sulfurtransferase GlpE -
  AVFI_RS12895 (AVFI_12895) rpoH 2810160..2811020 (-) 861 WP_005421372.1 RNA polymerase sigma factor RpoH -
  AVFI_RS12900 (AVFI_12900) ftsX 2811236..2812189 (-) 954 WP_005421374.1 permease-like cell division protein FtsX -
  AVFI_RS12905 (AVFI_12905) ftsE 2812182..2812850 (-) 669 WP_005421376.1 cell division ATP-binding protein FtsE -
  AVFI_RS12910 (AVFI_12910) pilA 2812854..2814092 (-) 1239 WP_012534380.1 signal recognition particle-docking protein FtsY Machinery gene
  AVFI_RS12915 (AVFI_12915) rsmD 2814163..2814765 (+) 603 WP_012534366.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  AVFI_RS12920 (AVFI_12920) - 2814766..2815032 (+) 267 WP_005421383.1 DUF1145 domain-containing protein -
  AVFI_RS12925 (AVFI_12925) - 2815177..2815770 (+) 594 WP_005421385.1 YhgN family NAAT transporter -
  AVFI_RS12930 (AVFI_12930) - 2815835..2816077 (-) 243 WP_011262818.1 YecH family metal-binding protein -
  AVFI_RS12935 (AVFI_12935) - 2816902..2817267 (-) 366 WP_011262820.1 hypothetical protein -
  AVFI_RS12940 (AVFI_12940) - 2817566..2817898 (+) 333 WP_005421391.1 DUF2500 domain-containing protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45130.04 Da        Isoelectric Point: 4.2919

>NTDB_id=567985 AVFI_RS12910 WP_012534380.1 2812854..2814092(-) (pilA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MTGKKKRGLLSWLGFGDEEKAEQPAVEQQSVEENAETLSQAPSKDDSAVESVVEDAELEQPKESEKVTVQAEETTEAEEV
VTEKEPEAELEAEPVIKVEEVQEKPTESFFARLKRSLQRTKENIGAGFFGLFSGKKIDDELFEELEEQLLIADVGMDTTV
RIIDSLTEKASKQDLKDGEALYGLLKEEMAEILAKVEQPLEIDEKNMPHVILMVGVNGVGKTTTIGKLAKQFQNEGKSVM
LAAGDTFRAAAVEQLQVWGQRNDVPVIAQHTGADSASVIYDAIEAARARKVDVVIADTAGRLQNKSNLMEELRKIVRVMK
KIDPSAPHEIMLTLDAGTGQNAISQAKLFSDVAPVTGITLTKLDGTAKGGVIFSIADQFQIPIRFIGVGEGIDDLRPFVA
QDFIEALFSREE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=567985 AVFI_RS12910 WP_012534380.1 2812854..2814092(-) (pilA) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGACAGGCAAAAAGAAACGCGGATTATTGTCTTGGTTAGGTTTTGGTGATGAAGAAAAAGCCGAACAACCAGCAGTAGA
ACAACAATCAGTAGAAGAAAATGCAGAAACGCTTTCTCAGGCTCCATCTAAAGATGATAGTGCCGTAGAGAGTGTAGTGG
AAGATGCAGAGCTTGAACAGCCTAAAGAAAGTGAGAAAGTAACGGTACAAGCTGAAGAAACGACAGAAGCGGAAGAAGTT
GTTACTGAGAAAGAACCTGAAGCGGAATTAGAGGCTGAGCCTGTAATTAAAGTCGAAGAAGTTCAAGAAAAACCAACCGA
AAGCTTCTTTGCTCGCTTAAAGCGTAGTTTGCAACGCACAAAAGAGAATATTGGTGCAGGATTCTTTGGTTTATTTAGCG
GTAAAAAAATTGATGATGAACTGTTTGAAGAGCTTGAAGAGCAGTTATTAATTGCCGATGTGGGAATGGACACGACAGTT
AGAATTATTGATAGTCTAACTGAAAAAGCGAGTAAGCAAGATCTTAAAGATGGTGAAGCATTATATGGTTTACTAAAAGA
AGAAATGGCTGAAATCTTAGCTAAAGTTGAACAACCTCTGGAAATTGATGAAAAAAATATGCCACACGTGATTTTAATGG
TTGGCGTAAATGGTGTTGGTAAAACAACAACGATCGGTAAGTTAGCAAAACAATTCCAAAATGAAGGTAAGTCGGTCATG
TTGGCGGCGGGCGATACGTTCCGTGCAGCGGCTGTTGAGCAACTTCAGGTTTGGGGTCAGCGTAATGATGTTCCTGTTAT
TGCTCAACATACTGGAGCTGATAGTGCGTCTGTTATTTATGATGCGATTGAAGCTGCACGAGCACGTAAAGTTGATGTTG
TTATTGCTGATACTGCAGGTCGTCTCCAAAATAAGAGTAACTTAATGGAGGAATTGCGTAAAATTGTTCGTGTAATGAAG
AAAATTGACCCATCAGCACCGCATGAGATCATGTTAACTTTAGATGCGGGTACGGGCCAAAATGCCATTAGCCAAGCTAA
ATTGTTCAGTGATGTTGCTCCAGTAACTGGAATTACATTAACGAAATTGGACGGTACAGCAAAAGGTGGTGTTATTTTCT
CTATTGCGGATCAATTCCAAATTCCAATCCGTTTTATCGGTGTTGGTGAAGGCATTGATGATTTACGTCCATTTGTGGCG
CAAGATTTTATTGAAGCATTATTTAGTCGTGAGGAATAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(127-189)

SRP54-type protein, GTPase domain (SRP54)

(208-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.433

100

0.459