Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AVFI_RS12045 Genome accession   NZ_CP092712
Coordinates   2633388..2634389 (-) Length   333 a.a.
NCBI ID   WP_054775331.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2628388..2639389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS12020 (AVFI_12020) aroK 2629230..2629748 (-) 519 WP_005421091.1 shikimate kinase AroK -
  AVFI_RS12025 (AVFI_12025) pilQ 2629973..2631661 (-) 1689 WP_012533907.1 type IV pilus secretin PilQ Machinery gene
  AVFI_RS12030 (AVFI_12030) pilP 2631748..2632266 (-) 519 WP_005421095.1 pilus assembly protein PilP Machinery gene
  AVFI_RS12035 (AVFI_12035) pilO 2632259..2632837 (-) 579 WP_005421098.1 type 4a pilus biogenesis protein PilO Machinery gene
  AVFI_RS12040 (AVFI_12040) pilN 2632837..2633403 (-) 567 WP_011262703.1 PilN domain-containing protein Machinery gene
  AVFI_RS12045 (AVFI_12045) pilM 2633388..2634389 (-) 1002 WP_054775331.1 type IV pilus biogenesis protein PilM Machinery gene
  AVFI_RS12050 (AVFI_12050) - 2634528..2637026 (+) 2499 WP_026029395.1 penicillin-binding protein 1A -
  AVFI_RS12055 (AVFI_12055) oxyR 2637093..2637985 (-) 893 Protein_2310 DNA-binding transcriptional regulator OxyR -
  AVFI_RS12060 (AVFI_12060) - 2638165..2638893 (+) 729 WP_011262707.1 redoxin family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37252.32 Da        Isoelectric Point: 6.9332

>NTDB_id=567982 AVFI_RS12045 WP_054775331.1 2633388..2634389(-) (pilM) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MIYPTITGLDVGHHSIKAVSVRLKKGQLDLVSSFEVLLPESVFVDTNNLNVEELKPYLSRIKKQLKLNQKQIAFSIPDSS
ITSKVVQIDSQLDERETEFAIAHNFEQHSSFSSDDLNIDYVASEHRGTGSLQTITYQVFATRKDLVNSRQRCFESAGLKP
VLADAHSNALLTLWQRAIAVYPDKKNWMLIDIGYMQTVFCIASPSQHLYSKHISFGAVAQEKETNSINEDNSIDLSAGTL
FIKQLSEHIHRQVTLYSSVNQHKVEGVWITGGGSMLPGLSDSLSYELSLPTVDLNLLSLFQTPKKRVGSFHEQKNQYASA
LGLALRGIEWLTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=567982 AVFI_RS12045 WP_054775331.1 2633388..2634389(-) (pilM) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGATCTACCCCACTATTACAGGTTTAGATGTAGGGCATCATAGCATTAAAGCCGTATCTGTAAGGTTAAAGAAAGGTCA
ATTAGATCTCGTTAGTTCTTTCGAAGTTTTATTGCCTGAATCTGTATTTGTGGATACCAATAATTTAAATGTCGAAGAAT
TAAAGCCTTATTTATCTCGAATAAAGAAACAGTTAAAGCTAAATCAAAAGCAAATCGCGTTCTCTATCCCTGATAGCAGT
ATTACGAGCAAAGTAGTGCAAATTGATAGTCAACTCGATGAACGAGAAACGGAATTTGCGATTGCCCATAATTTTGAGCA
GCATTCTTCTTTTTCATCAGATGACCTTAATATTGATTATGTTGCCTCTGAACATAGAGGGACTGGCAGCTTACAGACGA
TCACTTACCAAGTTTTTGCGACCCGAAAAGATTTAGTTAACTCTCGTCAGCGTTGTTTTGAATCTGCTGGACTTAAACCT
GTGCTTGCAGATGCTCATTCAAATGCACTTTTAACGTTATGGCAGAGAGCGATAGCGGTTTATCCCGACAAAAAGAATTG
GATGCTGATCGATATTGGTTATATGCAGACTGTTTTCTGTATTGCTTCTCCGAGTCAACATTTATATAGCAAACACATTT
CATTTGGTGCTGTAGCTCAAGAGAAAGAGACAAACTCAATTAACGAAGATAACTCAATTGACCTGTCCGCTGGGACGCTT
TTTATTAAGCAGTTATCTGAACATATTCATCGTCAAGTTACTCTTTATTCATCGGTTAACCAACATAAGGTTGAAGGAGT
ATGGATTACTGGTGGTGGCTCTATGCTACCGGGATTATCGGATTCGTTAAGCTACGAACTATCGCTACCAACGGTGGATT
TAAATCTTCTTTCTTTGTTTCAAACGCCAAAGAAAAGAGTGGGTTCGTTTCATGAACAAAAAAATCAATACGCATCAGCT
CTTGGATTGGCATTGAGAGGGATCGAATGGCTTACCAAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-327)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

38.11

98.498

0.375