Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AVFI_RS07775 Genome accession   NZ_CP092712
Coordinates   1666088..1667512 (+) Length   474 a.a.
NCBI ID   WP_199414879.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1661088..1672512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS07750 (AVFI_07750) - 1661822..1662808 (+) 987 WP_054775216.1 J domain-containing protein -
  AVFI_RS07755 (AVFI_07755) - 1662944..1663114 (+) 171 WP_011262064.1 hypothetical protein -
  AVFI_RS07760 (AVFI_07760) aqpZ 1663178..1663864 (-) 687 WP_005419605.1 aquaporin Z -
  AVFI_RS07765 (AVFI_07765) - 1664222..1664980 (-) 759 WP_017019274.1 DUF3307 domain-containing protein -
  AVFI_RS07770 (AVFI_07770) - 1664973..1665623 (-) 651 WP_054775214.1 hypothetical protein -
  AVFI_RS07775 (AVFI_07775) sbcB 1666088..1667512 (+) 1425 WP_199414879.1 exodeoxyribonuclease I Machinery gene
  AVFI_RS07780 (AVFI_07780) - 1667509..1667859 (+) 351 WP_005419612.1 CidA/LrgA family protein -
  AVFI_RS07785 (AVFI_07785) - 1667859..1668542 (+) 684 WP_054775213.1 CidB/LrgB family autolysis modulator -
  AVFI_RS07790 (AVFI_07790) cdd 1668694..1669587 (+) 894 WP_188863879.1 cytidine deaminase -
  AVFI_RS07795 (AVFI_07795) - 1669665..1670828 (-) 1164 WP_188863880.1 amidase family protein -
  AVFI_RS07800 (AVFI_07800) purT 1671045..1672220 (+) 1176 WP_054775212.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54372.81 Da        Isoelectric Point: 5.3485

>NTDB_id=567957 AVFI_RS07775 WP_199414879.1 1666088..1667512(+) (sbcB) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MPQNNAPSFFFFDYETWGTSPSLDRPCQFAGVRTDEDFNIIGEPLVIYCRPPVDYLPSPEACLITGITPQTAVNKGLSEP
EFIAKIHHELSQPNTCSLGYNNIRFDDEVSRYTLYRNFFEPYGWSWQNGNSRWDLLDVMRAVYALRPEGINWPKDEEGRP
SFKLEKLSVANSIEHANAHDAMADVIATIELAKKVKQAQPKMFNYLLSMRNKKKAATLIDIVEMTPLMHVSGMFGVDRGN
ISWIVPVAWHPTNNNAVITIDLALDPSVFLELNVEELHQRMYTKRSELGPDELPVPVKLVHLNKCPVLAPAKTLTAENAA
NLNVDREACLRNLKVIRENPEIRQKLIELYSIEPNYEKSTNVDTLLYDGFFSHADKATIDIIRQSTPEQLIDFEPNVTDP
RIKPLLFRYRARNFPHTLNEAEQLRWHAHLQDYFQTHLPDYEASFESLYLESEGNDKKVAILKAVYNYVQQLIS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=567957 AVFI_RS07775 WP_199414879.1 1666088..1667512(+) (sbcB) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGCCACAAAACAATGCACCTAGTTTCTTCTTCTTTGATTATGAAACATGGGGAACTAGCCCTTCTCTTGATCGACCGTG
CCAATTTGCTGGTGTCCGCACTGATGAAGATTTCAATATTATCGGTGAGCCTTTAGTTATTTACTGCCGCCCTCCGGTTG
ATTACCTTCCCTCACCTGAAGCGTGTTTGATTACAGGTATTACGCCACAAACAGCCGTTAATAAAGGACTTTCTGAACCA
GAATTTATTGCCAAAATTCATCATGAATTATCACAGCCTAATACGTGTTCTTTAGGTTATAACAACATTCGTTTTGATGA
TGAGGTTTCTCGCTACACACTCTATCGTAACTTCTTTGAACCTTACGGTTGGAGCTGGCAAAATGGCAACTCTCGTTGGG
ATCTATTAGATGTAATGCGTGCGGTTTATGCTCTTCGCCCTGAAGGTATTAATTGGCCTAAAGATGAAGAAGGCAGACCA
AGTTTTAAACTGGAAAAGCTCTCTGTTGCCAATAGCATTGAACACGCCAATGCCCACGATGCCATGGCGGATGTTATCGC
AACCATTGAGCTAGCTAAAAAAGTAAAACAAGCACAACCAAAAATGTTTAACTATTTGCTTTCTATGCGTAACAAGAAGA
AAGCAGCGACATTAATCGACATAGTTGAAATGACACCACTGATGCATGTTTCAGGCATGTTTGGTGTAGATAGAGGTAAC
ATCAGTTGGATAGTGCCAGTGGCTTGGCATCCAACCAATAACAACGCAGTTATTACTATTGATTTGGCTTTAGACCCAAG
TGTTTTTCTTGAGTTAAATGTTGAAGAACTGCATCAGCGTATGTACACCAAACGTTCTGAACTTGGCCCTGATGAGCTTC
CTGTTCCTGTTAAACTAGTGCATTTGAATAAGTGCCCTGTTCTTGCGCCTGCAAAAACATTGACTGCTGAAAATGCCGCT
AATTTGAATGTGGATCGCGAAGCGTGTTTACGTAATCTTAAAGTGATACGTGAAAACCCTGAGATCAGACAAAAACTGAT
TGAGCTGTACAGCATTGAGCCAAACTACGAGAAATCAACCAATGTGGATACGCTTCTTTATGATGGTTTCTTCTCGCATG
CTGATAAAGCGACCATTGATATTATTCGTCAATCAACGCCTGAGCAGCTAATTGACTTTGAGCCAAACGTGACAGATCCA
CGTATCAAACCACTGTTATTCCGATACCGTGCACGTAACTTCCCGCACACATTAAACGAAGCTGAGCAATTAAGATGGCA
CGCTCACCTTCAAGACTATTTTCAAACTCACTTGCCAGATTATGAAGCGAGTTTTGAAAGTCTATACCTTGAGTCCGAAG
GTAATGACAAAAAAGTGGCTATTTTAAAAGCCGTGTATAACTACGTACAACAATTAATATCATGA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(210-471)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

65.466

99.578

0.652