Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   IOMTU133_RS09985 Genome accession   NZ_AP017302
Coordinates   2175281..2175610 (+) Length   109 a.a.
NCBI ID   WP_023111548.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain IOMTU 133     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2170281..2180610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU133_RS09970 - 2170926..2171876 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  IOMTU133_RS09975 - 2171898..2172938 (+) 1041 WP_371032227.1 MraY family glycosyltransferase -
  IOMTU133_RS09980 (IOMTU133_2082) - 2173093..2175090 (+) 1998 WP_003143571.1 polysaccharide biosynthesis protein -
  IOMTU133_RS09985 (IOMTU133_2083) comEA/comE1 2175281..2175610 (+) 330 WP_023111548.1 ComEA family DNA-binding protein Machinery gene
  IOMTU133_RS09995 (IOMTU133_2085) - 2175827..2177023 (-) 1197 WP_023111549.1 amino acid aminotransferase -
  IOMTU133_RS10000 (IOMTU133_2086) uvrB 2177211..2179223 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11353.28 Da        Isoelectric Point: 8.0459

>NTDB_id=56788 IOMTU133_RS09985 WP_023111548.1 2175281..2175610(+) (comEA/comE1) [Pseudomonas aeruginosa strain IOMTU 133]
MHLIKSALLLILFACLPFSASAAPVGVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=56788 IOMTU133_RS09985 WP_023111548.1 2175281..2175610(+) (comEA/comE1) [Pseudomonas aeruginosa strain IOMTU 133]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGGCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment