Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/nlmT   Type   Regulator
Locus tag   MKR81_RS28800 Genome accession   NZ_CP092682
Coordinates   1258986..1259363 (+) Length   125 a.a.
NCBI ID   WP_345894561.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253986..1264363
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS05855 (MKR81_05855) - 1254750..1254917 (+) 168 WP_240305215.1 hypothetical protein -
  MKR81_RS05860 (MKR81_05860) - 1254955..1255935 (+) 981 WP_240305216.1 MvdC/MvdD family ATP grasp protein -
  MKR81_RS05865 (MKR81_05865) - 1256170..1256763 (+) 594 WP_240305217.1 hypothetical protein -
  MKR81_RS05870 (MKR81_05870) - 1257336..1257737 (+) 402 WP_182052736.1 hypothetical protein -
  MKR81_RS05875 (MKR81_05875) - 1257745..1258923 (+) 1179 WP_275892609.1 ABC transporter ATP-binding protein -
  MKR81_RS28800 comA/nlmT 1258986..1259363 (+) 378 WP_345894561.1 ATP-binding cassette domain-containing protein Regulator
  MKR81_RS05880 (MKR81_05880) - 1259387..1259821 (+) 435 WP_240305218.1 GNAT family N-acetyltransferase -
  MKR81_RS05885 (MKR81_05885) - 1259896..1260666 (+) 771 WP_240305219.1 phospholipase A -
  MKR81_RS05890 (MKR81_05890) - 1260711..1261244 (+) 534 WP_240305220.1 GNAT family protein -
  MKR81_RS05895 (MKR81_05895) - 1261241..1261654 (+) 414 WP_122019861.1 hypothetical protein -
  MKR81_RS05900 (MKR81_05900) - 1261992..1263128 (+) 1137 WP_240305221.1 toxin -
  MKR81_RS05905 (MKR81_05905) - 1263338..1264186 (+) 849 WP_240305222.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 13916.92 Da        Isoelectric Point: 5.1687

>NTDB_id=567834 MKR81_RS28800 WP_345894561.1 1258986..1259363(+) (comA/nlmT) [Vibrio campbellii strain IFL1]
MSGSILDNLLLGLDSSNDDSIYKVIEACKKSEAHDFIINFPDGYQTQIGDRGTLLSGGQKQRLSIARALLKNTEFIILDE
FTSAIDESTKDVISKNVIEIFKGKTILMITHDTRHFSLAKNIIEI

Nucleotide


Download         Length: 378 bp        

>NTDB_id=567834 MKR81_RS28800 WP_345894561.1 1258986..1259363(+) (comA/nlmT) [Vibrio campbellii strain IFL1]
ATGTCAGGTAGTATATTGGATAATCTTCTCCTTGGATTGGATAGCTCAAATGATGATAGTATTTATAAAGTAATCGAAGC
TTGCAAGAAGTCCGAAGCTCACGATTTCATTATAAATTTTCCTGATGGATATCAAACACAAATAGGTGATAGGGGAACTC
TTTTATCCGGTGGTCAAAAGCAGAGGCTATCGATAGCTAGAGCATTATTAAAAAATACAGAGTTTATTATATTGGATGAA
TTCACCAGCGCTATTGATGAAAGCACTAAGGATGTTATAAGTAAAAATGTTATAGAGATATTTAAAGGCAAAACGATTTT
AATGATCACTCATGATACGAGACATTTTTCTCTAGCTAAAAATATAATTGAAATATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(28-82)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/nlmT Streptococcus mutans UA159

43.363

90.4

0.392