Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MKR81_RS15375 Genome accession   NZ_CP092682
Coordinates   3329145..3330002 (-) Length   285 a.a.
NCBI ID   WP_005430191.1    Uniprot ID   A0A0A3EN09
Organism   Vibrio campbellii strain IFL1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3324145..3335002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS15345 (MKR81_15345) rph 3324166..3324882 (-) 717 WP_005430192.1 ribonuclease PH -
  MKR81_RS15350 (MKR81_15350) - 3325057..3325923 (+) 867 WP_045456104.1 YicC/YloC family endoribonuclease -
  MKR81_RS15355 (MKR81_15355) - 3325990..3326943 (-) 954 WP_240304830.1 DMT family transporter -
  MKR81_RS15360 (MKR81_15360) - 3327142..3327513 (-) 372 WP_081234701.1 hypothetical protein -
  MKR81_RS15365 (MKR81_15365) - 3327681..3328106 (-) 426 WP_005430195.1 phosphate-starvation-inducible PsiE family protein -
  MKR81_RS15370 (MKR81_15370) - 3328269..3329108 (-) 840 WP_005529144.1 ABC transporter ATP-binding protein -
  MKR81_RS15375 (MKR81_15375) amiE 3329145..3330002 (-) 858 WP_005430191.1 ABC transporter ATP-binding protein Regulator
  MKR81_RS15380 (MKR81_15380) - 3330012..3331838 (-) 1827 WP_045368218.1 extracellular solute-binding protein -
  MKR81_RS15385 (MKR81_15385) - 3331877..3332920 (-) 1044 WP_240304831.1 ABC transporter permease subunit -
  MKR81_RS15390 (MKR81_15390) - 3332922..3333947 (-) 1026 WP_005430070.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 31639.65 Da        Isoelectric Point: 4.4154

>NTDB_id=567823 MKR81_RS15375 WP_005430191.1 3329145..3330002(-) (amiE) [Vibrio campbellii strain IFL1]
MENDVILSVKDLEVEFTTDDGPVKVLHGVNFDVRAGRTLGLVGESGSGKSVTSMSIMGLLPKPYGNIVNGEVDYRGTNLV
TLPAEEMYAMRGDRISIIFQDPMTALNPVHSIGRQLCEVLELHRPELDKKEREAYAIEMLAKVKIPMPEKRLNEYPHNLS
GGMRQRVMIAMALACKPDILICDEPTTALDVTVQASILELMNELQEETGMAMIFITHDLGVVAEVCDDVAVMYGGRIVEK
AEIFELFDNPQHPYTERLMGLMPSLDNEPKQMIDIKPIDASMFAS

Nucleotide


Download         Length: 858 bp        

>NTDB_id=567823 MKR81_RS15375 WP_005430191.1 3329145..3330002(-) (amiE) [Vibrio campbellii strain IFL1]
ATGGAAAACGATGTAATCCTGAGTGTTAAAGACCTAGAAGTCGAATTCACTACTGATGACGGCCCAGTGAAAGTACTGCA
TGGCGTGAATTTTGATGTTCGCGCCGGGCGTACCCTTGGCCTTGTAGGCGAATCGGGCAGTGGTAAGAGTGTGACCTCCA
TGTCCATCATGGGTTTGCTGCCGAAACCTTACGGTAATATCGTCAATGGTGAGGTTGATTACCGCGGTACAAACTTGGTG
ACACTGCCGGCAGAAGAAATGTATGCCATGCGCGGTGATCGCATTTCAATCATCTTCCAGGATCCAATGACGGCGCTTAA
CCCAGTGCACTCTATTGGTCGTCAGCTTTGTGAGGTGCTAGAGCTACACCGTCCTGAGTTGGATAAGAAAGAACGTGAAG
CTTACGCTATTGAAATGTTGGCGAAAGTGAAAATCCCAATGCCAGAAAAGCGCTTGAATGAGTATCCACACAATCTGTCT
GGCGGCATGCGTCAGCGTGTGATGATCGCCATGGCGTTGGCGTGTAAACCCGACATTCTGATCTGTGATGAGCCAACCAC
TGCACTGGATGTAACGGTTCAGGCGTCTATCCTTGAACTAATGAACGAGCTTCAAGAAGAAACTGGCATGGCGATGATCT
TCATTACCCACGATCTAGGTGTAGTTGCTGAAGTGTGTGATGACGTGGCGGTGATGTATGGTGGTCGTATTGTTGAAAAG
GCAGAGATTTTCGAGCTATTCGATAATCCGCAACACCCATACACTGAACGTTTGATGGGCTTGATGCCAAGCTTAGATAA
CGAGCCTAAGCAAATGATCGACATTAAACCGATCGATGCCAGCATGTTTGCTAGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-273)

ABC transporter (ABC_tran)

(26-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A3EN09

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

48.936

98.947

0.484
  amiE Streptococcus thermophilus LMD-9

48.936

98.947

0.484
  amiE Streptococcus salivarius strain HSISS4

48.936

98.947

0.484
  oppD Streptococcus mutans UA159

50.752

93.333

0.474