Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilZ   Type   Machinery gene
Locus tag   LPE509_RS08500 Genome accession   NC_020521
Coordinates   1925799..1926140 (-) Length   113 a.a.
NCBI ID   WP_010947130.1    Uniprot ID   Q5ZVN9
Organism   Legionella pneumophila subsp. pneumophila LPE509     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1920799..1931140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPE509_RS08480 (LPE509_01798) - 1921039..1922319 (+) 1281 WP_010947134.1 MFS transporter -
  LPE509_RS08485 (LPE509_01799) - 1922395..1923687 (-) 1293 WP_010947133.1 MFS transporter -
  LPE509_RS08490 (LPE509_01800) - 1923743..1924843 (-) 1101 WP_010947132.1 anhydro-N-acetylmuramic acid kinase -
  LPE509_RS08495 (LPE509_01801) - 1924955..1925743 (-) 789 WP_015444530.1 TatD family hydrolase -
  LPE509_RS08500 (LPE509_01802) pilZ 1925799..1926140 (-) 342 WP_010947130.1 PilZ domain-containing protein Machinery gene
  LPE509_RS08505 (LPE509_01803) - 1926267..1927172 (-) 906 WP_010947129.1 DNA polymerase III subunit delta' -
  LPE509_RS08510 (LPE509_01804) tmk 1927169..1927807 (-) 639 WP_010947128.1 dTMP kinase -
  LPE509_RS08515 (LPE509_01805) mltG 1927807..1928805 (-) 999 WP_010947127.1 endolytic transglycosylase MltG -
  LPE509_RS08520 (LPE509_01806) fabF 1928806..1930044 (-) 1239 WP_010947126.1 beta-ketoacyl-ACP synthase II -
  LPE509_RS08525 (LPE509_01807) acpP 1930064..1930312 (-) 249 WP_003631752.1 acyl carrier protein -
  LPE509_RS08530 (LPE509_01808) fabG 1930397..1931140 (-) 744 WP_407716501.1 3-oxoacyl-ACP reductase FabG -

Sequence


Protein


Download         Length: 113 a.a.        Molecular weight: 12521.54 Da        Isoelectric Point: 8.2421

>NTDB_id=56780 LPE509_RS08500 WP_010947130.1 1925799..1926140(-) (pilZ) [Legionella pneumophila subsp. pneumophila LPE509]
MTEKPQIINCSFPNEASLYMAYMPFVKGGGLFIRTQHVYSLGQSLELSVKLLNENEPYLVTGKIVWITPKGAQGNKPPGV
GIQFTGENSRYLCNKIETYLAGMLKSCQVTDTI

Nucleotide


Download         Length: 342 bp        

>NTDB_id=56780 LPE509_RS08500 WP_010947130.1 1925799..1926140(-) (pilZ) [Legionella pneumophila subsp. pneumophila LPE509]
ATGACCGAAAAACCACAGATTATAAACTGCTCATTTCCCAATGAAGCATCTTTGTACATGGCTTACATGCCTTTTGTGAA
AGGTGGCGGTCTTTTTATAAGAACTCAACACGTTTATTCTCTAGGGCAGTCGCTTGAATTATCTGTTAAATTGCTCAATG
AAAATGAACCATATTTGGTCACTGGTAAAATAGTCTGGATTACTCCTAAAGGTGCACAAGGTAATAAGCCGCCGGGAGTT
GGTATTCAATTTACCGGTGAAAACAGTCGTTATCTATGTAACAAGATAGAAACTTATTTGGCAGGAATGCTAAAATCATG
TCAGGTTACAGATACTATATAG

Domains


Predicted by InterproScan.

(10-101)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZVN9

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

99.115

100

0.991

  pilZ Legionella pneumophila strain ERS1305867

99.115

100

0.991


Multiple sequence alignment