Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MKR81_RS09410 Genome accession   NZ_CP092682
Coordinates   2013413..2014357 (+) Length   314 a.a.
NCBI ID   WP_045452701.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2008413..2019357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS09395 (MKR81_09395) - 2008959..2009837 (+) 879 WP_240304430.1 AEC family transporter -
  MKR81_RS09400 (MKR81_09400) - 2009929..2010672 (+) 744 WP_240304431.1 metallophosphoesterase -
  MKR81_RS09405 (MKR81_09405) - 2010867..2013002 (-) 2136 WP_240304432.1 condensation domain-containing protein -
  MKR81_RS09410 (MKR81_09410) ceuB 2013413..2014357 (+) 945 WP_045452701.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  MKR81_RS09415 (MKR81_09415) - 2014354..2015307 (+) 954 WP_191117512.1 iron chelate uptake ABC transporter family permease subunit -
  MKR81_RS09420 (MKR81_09420) - 2015363..2016346 (+) 984 WP_240304433.1 siderophore ABC transporter substrate-binding protein -
  MKR81_RS09425 (MKR81_09425) - 2016485..2018677 (+) 2193 WP_240304434.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 33706.52 Da        Isoelectric Point: 8.4615

>NTDB_id=567795 MKR81_RS09410 WP_045452701.1 2013413..2014357(+) (ceuB) [Vibrio campbellii strain IFL1]
MNAKIIFVFFLLCIVSIFIGANPIDWSLLLKMDESAWLPITASRLPRLVALILTGAGLAMCGVILQHIVRNRFVEPGTTG
GLDAAKLGILVSIVMLPNSDKLERMIFAVVFCFAAGLIYIAIVRKIKFSNSALVPVIGLMFGSVLSAIAEFYAYQNNVLQ
SMSGWLMGDFSKVVQEHYEIIYLILPTTLLTYFYANKFTVMGMGEDAASNLGINFATTAALGLMLVSVTVAVTVVTVGAI
HFVGLVIPNLVALKYGDHLKNTLPIVALGGASLLIFCDVISRLVVFPFEVPIGLTASAIGGTLFLVLLLKGARA

Nucleotide


Download         Length: 945 bp        

>NTDB_id=567795 MKR81_RS09410 WP_045452701.1 2013413..2014357(+) (ceuB) [Vibrio campbellii strain IFL1]
ATGAACGCTAAAATTATCTTTGTTTTCTTTTTATTGTGTATCGTTTCCATTTTTATTGGCGCCAACCCAATCGATTGGTC
ACTGCTGCTGAAGATGGACGAAAGTGCTTGGTTGCCGATTACTGCTAGCAGACTTCCGAGGTTGGTTGCGTTGATTCTGA
CTGGGGCCGGCTTGGCGATGTGCGGCGTCATCTTGCAACACATCGTCAGAAATCGTTTTGTAGAGCCTGGGACTACCGGC
GGCCTAGATGCTGCCAAGCTTGGTATTTTGGTATCGATCGTCATGTTGCCAAACTCAGATAAGCTTGAGCGCATGATTTT
TGCTGTCGTATTTTGCTTTGCAGCAGGGCTCATTTACATCGCGATCGTACGAAAAATTAAATTCAGTAATTCAGCATTGG
TCCCAGTCATTGGACTGATGTTTGGCAGCGTATTGAGCGCAATCGCTGAATTTTACGCTTATCAAAATAACGTTCTTCAA
AGCATGTCTGGCTGGTTAATGGGAGACTTTTCTAAGGTTGTACAGGAACACTACGAGATCATTTACCTGATCTTACCCAC
CACTCTGTTGACCTACTTCTACGCAAATAAATTTACCGTCATGGGTATGGGAGAAGATGCAGCATCTAACTTGGGCATTA
ACTTCGCGACAACGGCAGCGTTAGGTCTGATGCTGGTTTCCGTGACCGTTGCTGTGACCGTCGTGACCGTCGGGGCAATT
CATTTTGTCGGTTTAGTGATCCCAAACCTTGTCGCACTAAAATATGGCGACCACCTGAAAAACACACTGCCAATCGTGGC
ATTGGGTGGCGCATCACTGCTTATTTTTTGCGATGTGATAAGCAGACTTGTGGTCTTTCCTTTTGAGGTTCCGATCGGCC
TTACCGCGAGTGCGATTGGTGGCACCCTATTTCTTGTATTGCTCCTTAAAGGGGCACGTGCATGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(10-310)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

45.791

94.586

0.433