Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   MKR81_RS09075 Genome accession   NZ_CP092682
Coordinates   1933358..1934353 (+) Length   331 a.a.
NCBI ID   WP_240304395.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1928358..1939353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS09055 (MKR81_09055) - 1928718..1930328 (+) 1611 WP_240304391.1 peptide ABC transporter substrate-binding protein -
  MKR81_RS09060 (MKR81_09060) oppB 1930493..1931413 (+) 921 WP_240304392.1 oligopeptide ABC transporter permease OppB -
  MKR81_RS09065 (MKR81_09065) - 1931423..1932355 (+) 933 WP_240304393.1 ABC transporter permease subunit -
  MKR81_RS09070 (MKR81_09070) - 1932365..1933348 (+) 984 WP_240304394.1 oligopeptide/dipeptide ABC transporter ATP-binding protein -
  MKR81_RS09075 (MKR81_09075) amiE 1933358..1934353 (+) 996 WP_240304395.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  MKR81_RS09080 (MKR81_09080) - 1934350..1936146 (+) 1797 WP_240304396.1 aminopeptidase P family protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 36524.35 Da        Isoelectric Point: 7.8614

>NTDB_id=567792 MKR81_RS09075 WP_240304395.1 1933358..1934353(+) (amiE) [Vibrio campbellii strain IFL1]
MTQQEVLLSARDLKVHFPVSRHIIPSRRKIVKAVNGIDLDVCRGETLGIVGESGCGKSTLARALLRLVEPTHGTLTWKGE
DMRSFGKNALALRRREFQMIFQDPSASLNPRLTISECIAEPLLTHEPGLKRAEVEKRVIAMMDKVGLLASQRNRYPHEFS
GGQCQRVGIARALILNPDLVVCDEPVSALDVSIQAQVINLLDDLKQEMGLTLVMIAHDLSVVRHISDRVMVMYLGTPMEV
GRYDQVFDDAQHPYTKALLSAVPIANPQLARNREIQLLPGDLPSPLSPPSGCVFRTRCPEATQLCGQQSPAKIGSEQHHI
YCSNMISGSLS

Nucleotide


Download         Length: 996 bp        

>NTDB_id=567792 MKR81_RS09075 WP_240304395.1 1933358..1934353(+) (amiE) [Vibrio campbellii strain IFL1]
ATGACCCAGCAAGAAGTGTTATTGTCTGCCCGCGACCTGAAAGTCCACTTTCCAGTATCGCGCCATATCATTCCTAGTCG
AAGAAAGATCGTCAAAGCGGTGAATGGCATTGACTTAGATGTGTGCCGAGGCGAAACCCTCGGCATTGTCGGCGAATCCG
GTTGCGGAAAGTCCACATTGGCGCGAGCCCTACTTCGTTTGGTTGAGCCGACACATGGCACCCTGACGTGGAAAGGTGAA
GATATGCGTAGTTTTGGCAAAAACGCACTCGCCCTTCGTCGTCGCGAATTCCAGATGATATTTCAGGATCCATCAGCCAG
CTTAAACCCGCGCTTAACCATTTCAGAATGCATTGCCGAACCACTACTAACGCACGAACCAGGACTTAAACGTGCCGAAG
TCGAAAAGCGAGTCATCGCCATGATGGACAAAGTAGGACTGCTCGCAAGCCAGCGTAACCGCTATCCGCATGAGTTTTCT
GGTGGTCAGTGTCAACGTGTCGGCATCGCACGTGCGTTGATTCTTAATCCCGACTTGGTGGTGTGTGATGAGCCTGTTAG
CGCACTTGATGTGTCCATTCAGGCGCAAGTGATCAATCTACTCGATGACCTCAAACAAGAAATGGGGCTGACGCTGGTAA
TGATTGCTCACGACCTCAGCGTGGTACGTCATATTAGTGATCGCGTAATGGTGATGTATCTGGGTACGCCGATGGAGGTC
GGACGTTACGACCAAGTATTTGATGATGCGCAGCACCCTTATACCAAAGCGCTGCTTTCTGCAGTGCCAATCGCCAACCC
TCAATTAGCACGCAACCGCGAGATCCAATTGCTGCCCGGCGATCTCCCTTCCCCGCTCAGCCCTCCGAGCGGTTGCGTCT
TTCGAACCCGATGCCCAGAAGCAACCCAACTCTGCGGGCAACAAAGCCCTGCAAAAATTGGCTCTGAGCAACATCATATC
TATTGTTCAAACATGATTTCAGGAAGTCTTTCATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(238-305)

ABC transporter (ABC_tran)

(35-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.764

94.864

0.387
  amiE Streptococcus thermophilus LMD-9

40.764

94.864

0.387
  amiE Streptococcus salivarius strain HSISS4

39.809

94.864

0.378
  amiF Streptococcus salivarius strain HSISS4

44.444

84.29

0.375
  amiF Streptococcus thermophilus LMG 18311

44.404

83.686

0.372
  amiF Streptococcus thermophilus LMD-9

44.043

83.686

0.369
  oppD Streptococcus mutans UA159

38.658

94.562

0.366