Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MKR81_RS00515 Genome accession   NZ_CP092682
Coordinates   109698..110918 (+) Length   406 a.a.
NCBI ID   WP_240304913.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 104698..115918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS00480 (MKR81_00480) - 104953..105282 (-) 330 WP_005430363.1 DUF2500 domain-containing protein -
  MKR81_RS00485 (MKR81_00485) - 105524..105889 (+) 366 WP_005430355.1 hypothetical protein -
  MKR81_RS00490 (MKR81_00490) - 106911..107531 (+) 621 WP_240304912.1 lysoplasmalogenase -
  MKR81_RS00495 (MKR81_00495) - 107601..107822 (+) 222 WP_038890528.1 YecH family metal-binding protein -
  MKR81_RS00500 (MKR81_00500) - 107935..108519 (+) 585 WP_005430358.1 YhgN family NAAT transporter -
  MKR81_RS00505 (MKR81_00505) - 108583..108849 (-) 267 WP_005438504.1 DUF1145 domain-containing protein -
  MKR81_RS00510 (MKR81_00510) rsmD 108875..109474 (-) 600 WP_005430362.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MKR81_RS00515 (MKR81_00515) pilA 109698..110918 (+) 1221 WP_240304913.1 signal recognition particle-docking protein FtsY Machinery gene
  MKR81_RS00520 (MKR81_00520) ftsE 110941..111615 (+) 675 WP_005535654.1 cell division ATP-binding protein FtsE -
  MKR81_RS00525 (MKR81_00525) ftsX 111605..112573 (+) 969 WP_005430346.1 permease-like cell division protein FtsX -
  MKR81_RS00530 (MKR81_00530) rpoH 112749..113606 (+) 858 WP_047482666.1 RNA polymerase sigma factor RpoH -
  MKR81_RS00535 (MKR81_00535) glpE 114020..114340 (+) 321 WP_010650540.1 thiosulfate sulfurtransferase GlpE -
  MKR81_RS00540 (MKR81_00540) glpG 114340..115182 (+) 843 WP_005430922.1 rhomboid family intramembrane serine protease GlpG -
  MKR81_RS00545 (MKR81_00545) - 115283..115693 (-) 411 WP_005535662.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44080.71 Da        Isoelectric Point: 4.3006

>NTDB_id=567749 MKR81_RS00515 WP_240304913.1 109698..110918(+) (pilA) [Vibrio campbellii strain IFL1]
MTEKKKRGLLSWLGFGDEEQSQKPTTEESVKEEAAEAPAAEQQPTEEVAEQAEEKATVEAEPEKAEAAPAEAEAEAEAEA
EAEEPQIAVAPRVQEQEKPTESFFARLKRSLSRTKANIGAGFFGLFSGKKIDDDLFEELEEQLLIADVGMETTTKIINNL
TEKASRGDLKDGEALYGLLKEEMAEILAKVEQPLEIDSSKTPYVILMVGVNGVGKTTTIGKLAKQFQNQGKKVMLAAGDT
FRAAAVEQLQVWGERNNVPVIAQHTGADSASVIYDAIEAAKARGVDVVIADTAGRLQNKANLMEELRKIVRVMKKIDDSA
PHEIMLTLDAGTGQNAISQAKLFSDVAPLTGITLTKLDGTAKGGVIFAIADQFEIPIRYIGVGEGIEDLRPFETQEFIDA
LFSREE

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=567749 MKR81_RS00515 WP_240304913.1 109698..110918(+) (pilA) [Vibrio campbellii strain IFL1]
ATGACGGAAAAAAAGAAGCGCGGATTACTTTCGTGGCTAGGTTTTGGTGATGAAGAGCAAAGCCAAAAACCGACAACTGA
AGAGTCAGTAAAAGAAGAAGCCGCTGAAGCTCCTGCCGCCGAGCAACAACCCACAGAAGAAGTTGCCGAGCAAGCAGAAG
AAAAAGCAACAGTTGAAGCTGAGCCGGAGAAAGCCGAGGCTGCCCCAGCAGAAGCAGAAGCAGAAGCAGAAGCAGAAGCA
GAAGCAGAAGAGCCACAAATAGCCGTTGCGCCTCGAGTTCAAGAACAAGAAAAGCCAACTGAGAGCTTCTTTGCTCGCCT
TAAACGCAGCCTAAGCCGAACCAAGGCGAACATCGGTGCGGGTTTCTTTGGTTTGTTCAGCGGTAAGAAGATCGACGATG
ACCTTTTCGAAGAGCTAGAAGAACAACTGCTGATCGCTGATGTGGGTATGGAAACCACAACAAAAATCATCAACAACCTG
ACTGAAAAAGCCTCTCGTGGCGATCTTAAAGATGGCGAAGCACTTTACGGTCTGCTGAAAGAAGAGATGGCAGAAATTCT
TGCGAAAGTAGAACAGCCTCTCGAAATCGACAGCAGCAAAACCCCTTACGTTATCTTGATGGTCGGCGTGAACGGTGTGG
GTAAAACCACCACAATCGGTAAGCTGGCTAAGCAATTCCAAAACCAAGGTAAGAAAGTCATGCTTGCGGCGGGCGATACT
TTCCGTGCGGCAGCGGTTGAGCAGCTACAAGTGTGGGGCGAGCGTAACAACGTTCCTGTGATTGCTCAGCACACTGGCGC
GGACAGTGCCTCGGTTATCTATGATGCGATTGAAGCGGCAAAAGCGCGTGGCGTCGATGTCGTGATTGCCGATACTGCAG
GTCGTCTACAAAACAAAGCGAACCTGATGGAAGAGCTACGTAAGATTGTACGTGTGATGAAGAAGATTGATGACTCTGCG
CCACACGAGATCATGCTAACGCTAGACGCAGGCACAGGCCAAAATGCGATTAGCCAAGCGAAACTTTTCAGTGATGTTGC
CCCTCTAACCGGGATTACATTGACTAAGCTGGATGGTACAGCGAAAGGTGGCGTGATCTTCGCTATCGCTGATCAGTTCG
AAATTCCAATTCGCTACATTGGTGTAGGCGAAGGCATCGAAGACTTGCGTCCATTTGAAACTCAAGAGTTCATTGACGCT
CTGTTTAGTCGTGAAGAGTAA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(203-402)

SRP54-type protein, helical bundle domain (SRP54_N)

(122-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.382

98.768

0.468