Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MJ614_RS05155 Genome accession   NZ_CP092647
Coordinates   587951..589378 (+) Length   475 a.a.
NCBI ID   WP_072146012.1    Uniprot ID   -
Organism   Escherichia coli strain EC5502     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 582951..594378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ614_RS05125 cobU 583222..583767 (-) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  MJ614_RS05130 - 583934..584125 (+) 192 Protein_629 EutP/PduV family microcompartment system protein -
  MJ614_RS05135 tmaR 584226..584555 (-) 330 WP_000450409.1 DUF496 family protein -
  MJ614_RS05140 yeeA 584727..585785 (-) 1059 WP_021542154.1 FUSC family protein -
  MJ614_RS05145 sbmC 585984..586457 (-) 474 WP_001105414.1 DNA gyrase inhibitor SbmC -
  MJ614_RS05150 dacD 586576..587742 (-) 1167 WP_032195607.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  MJ614_RS05155 sbcB 587951..589378 (+) 1428 WP_072146012.1 exodeoxyribonuclease I Machinery gene
  MJ614_RS05160 tsuB 589421..589648 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  MJ614_RS05165 tsuA 589662..590720 (-) 1059 WP_032195608.1 thiosulfate utilization transporter TsuA/YeeE -
  MJ614_RS05170 plaP 590899..592257 (-) 1359 WP_032195609.1 putrescine/proton symporter PlaP -
  MJ614_RS05175 yoeI 592247..592309 (-) 63 WP_010723108.1 membrane protein YoeI -
  MJ614_RS05180 yeeY 592524..593453 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  MJ614_RS05185 yeeZ 593499..594323 (-) 825 WP_000754758.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54460.75 Da        Isoelectric Point: 5.5939

>NTDB_id=567672 MJ614_RS05155 WP_072146012.1 587951..589378(+) (sbcB) [Escherichia coli strain EC5502]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQHADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=567672 MJ614_RS05155 WP_072146012.1 587951..589378(+) (sbcB) [Escherichia coli strain EC5502]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCACTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGACGTTATGCGTGCCTGTTATGCCCTGCGCCCTGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTAATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCAGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCACAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGTTATGCTGATGAATTGCAGATGCTGGTACAACAAC
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.362

98.947

0.587