Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   MID12_RS26750 Genome accession   NZ_CP092644
Coordinates   6616260..6618362 (-) Length   700 a.a.
NCBI ID   WP_263171298.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6611260..6623362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS26730 pgl 6611620..6612399 (-) 780 WP_263171293.1 6-phosphogluconolactonase -
  MID12_RS26735 opcA 6612396..6613478 (-) 1083 WP_040254608.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  MID12_RS26740 zwf 6613475..6615007 (-) 1533 WP_263171297.1 glucose-6-phosphate dehydrogenase -
  MID12_RS26745 tal 6615012..6616154 (-) 1143 WP_040254610.1 transaldolase -
  MID12_RS26750 recP/tkt 6616260..6618362 (-) 2103 WP_263171298.1 transketolase Machinery gene
  MID12_RS26755 - 6618833..6619780 (+) 948 WP_052482650.1 heme o synthase -
  MID12_RS26760 - 6619856..6620203 (+) 348 WP_040254614.1 hypothetical protein -
  MID12_RS26765 - 6620377..6621174 (+) 798 WP_263171303.1 nucleotidyltransferase domain-containing protein -
  MID12_RS26770 - 6621197..6622213 (-) 1017 WP_263171305.1 COX15/CtaA family protein -
  MID12_RS26775 - 6622382..6623173 (-) 792 WP_040254619.1 ABC transporter permease -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75220.08 Da        Isoelectric Point: 5.0591

>NTDB_id=567657 MID12_RS26750 WP_263171298.1 6616260..6618362(-) (recP/tkt) [Streptomyces sp. SCSIO ZS0520]
MSTKPTTTDLQWTDLDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADTDWTGRDRFILSAGHSS
LTLYIQLYLGGFGLQLEDLESFRTWGSKTPGHPEYGHTPGVETTTGPLGQGVANAVGMAMAARYERGLFDPDAAPGTSPF
DHYVYAIAGDGCLQEGISAEASSLAGHQKLGNLILLWDDNHISIEGDTEAAISEDTVARYEAYGWHVQRVEPKADGDLDP
EALFRAIEAAKAVTDRPSFIAMRSIIAWPAPNAQNTEAAHGSALGDEEVAATKRVLGFDPEKSFEVGEEVLAHTRGLLDR
GREARAEWEKSFASWRTANPEHAARFDRVAAGELPEGWEKELPVFETGKSLATRAASGKVLQALGPVLPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPGADPYGRTVHFGIREHAMAASMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHAPVT
YVWTHDSIGLGEDGPTHQPVEHLAALRAIPGLNVVRPADANETALAWREILRRHTKVYGKGTPHGLVLTRQGVPTYEPHE
DVAKGGYVLAEAEDEGGRSVEPQVVLIGTGSEVQLAVGAREQLQAGGVPTRVVSMPSVEWFEEQDQAYRESVLPPSVRAR
VAVEAGVGLTWYRFVGDAGRIVSLEHFGASADGKVLFEKYGFTADAVAAAARESLEAAQR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=567657 MID12_RS26750 WP_263171298.1 6616260..6618362(-) (recP/tkt) [Streptomyces sp. SCSIO ZS0520]
GTGAGCACCAAGCCGACCACCACAGACCTTCAGTGGACCGATCTGGACCAGCGGGCGGTGGACACCGTTCGCGTACTGGC
AGCGGATGCCGTGCAGAAAGTGGGCAACGGTCATCCCGGGACCGCGATGAGCCTGGCCCCGGCCGCCTACACGCTGTTCC
AGAAGGTGATGCGGCACGACCCCGCAGACACCGACTGGACGGGCCGCGACCGGTTCATCCTCTCCGCGGGCCACTCCTCC
CTGACCCTCTACATCCAGCTGTACCTGGGCGGGTTCGGGCTCCAGCTGGAGGACCTGGAGTCCTTCCGCACCTGGGGTTC
GAAGACCCCGGGCCACCCGGAGTACGGGCACACCCCGGGCGTGGAGACCACCACCGGGCCGCTCGGCCAGGGCGTCGCCA
ACGCGGTGGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTCTTCGACCCGGACGCCGCCCCCGGCACCTCCCCCTTC
GACCACTACGTCTACGCGATCGCGGGCGACGGCTGCCTCCAGGAGGGCATCTCCGCGGAGGCCTCCTCGCTGGCCGGCCA
CCAGAAGCTCGGCAATCTGATCCTGCTGTGGGACGACAACCACATCTCGATCGAGGGCGACACCGAGGCCGCGATCTCCG
AGGACACCGTCGCGCGCTACGAGGCCTACGGCTGGCACGTGCAGCGGGTGGAGCCGAAGGCGGACGGCGACCTCGACCCC
GAGGCGCTGTTCCGCGCGATCGAGGCGGCCAAGGCCGTCACCGACCGCCCGTCCTTCATCGCGATGCGCTCGATCATCGC
CTGGCCCGCCCCGAACGCGCAGAACACCGAGGCCGCGCACGGCTCGGCGCTCGGTGACGAGGAGGTCGCGGCGACCAAGC
GGGTGCTCGGCTTCGACCCGGAGAAGTCCTTCGAGGTGGGCGAGGAGGTCCTCGCGCACACCCGCGGCCTGCTGGACCGC
GGCCGCGAGGCCCGCGCCGAGTGGGAGAAGTCCTTCGCCTCCTGGCGCACCGCCAACCCCGAGCACGCCGCGCGCTTCGA
CCGGGTCGCCGCGGGCGAGCTGCCCGAGGGCTGGGAGAAGGAGCTGCCGGTCTTCGAGACGGGCAAGTCGCTGGCCACCC
GCGCCGCCTCCGGCAAGGTGCTCCAGGCCCTCGGCCCGGTCCTGCCGGAGCTGTGGGGCGGCAGCGCCGACCTCGCGGGC
TCCAACAACACGACGATCGACAAGACCTCGTCGTTCCTGCCCGCGGGCAACCCGCTGCCGGGCGCCGACCCGTACGGCCG
CACCGTGCACTTCGGCATCCGCGAGCACGCGATGGCCGCGAGCATGAACGGCATCGCGCTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCGGTGCGGCTCTCCGCGCTGATGCACGCGCCGGTCACC
TACGTCTGGACGCACGACTCGATCGGCCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCCGCACTGCG
CGCCATCCCGGGCCTGAACGTCGTCCGCCCCGCCGACGCCAACGAGACCGCGCTCGCCTGGCGGGAGATCCTGCGCCGCC
ACACCAAGGTGTACGGCAAGGGCACCCCGCACGGACTGGTGCTCACCCGCCAGGGCGTGCCCACCTACGAGCCCCACGAG
GACGTGGCCAAGGGCGGCTATGTCCTGGCGGAGGCCGAGGACGAGGGCGGCCGGTCCGTCGAGCCGCAGGTGGTGCTCAT
CGGCACCGGCTCCGAGGTGCAGCTCGCGGTCGGCGCGCGCGAGCAGCTCCAGGCCGGGGGCGTGCCCACCCGGGTGGTCT
CGATGCCGTCCGTGGAGTGGTTCGAGGAGCAGGACCAGGCGTACCGGGAGTCGGTACTGCCGCCGTCGGTGCGGGCCCGG
GTCGCGGTCGAGGCGGGCGTGGGCCTGACCTGGTACCGCTTCGTCGGGGACGCGGGCCGGATCGTCTCGCTGGAGCACTT
CGGTGCCTCGGCGGACGGGAAGGTCCTCTTCGAGAAGTACGGCTTCACCGCGGACGCCGTCGCCGCCGCCGCGCGGGAAT
CCCTCGAAGCCGCACAGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, C-terminal domain (Transketolase_C)

(581-687)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-535)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

45.974

97.571

0.449