Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   MID12_RS23865 Genome accession   NZ_CP092644
Coordinates   5979054..5980790 (-) Length   578 a.a.
NCBI ID   WP_040253868.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5974054..5985790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS23850 - 5975473..5975985 (-) 513 WP_263170619.1 MmpS family protein -
  MID12_RS23855 - 5976182..5977057 (+) 876 WP_263170620.1 PhzF family phenazine biosynthesis protein -
  MID12_RS23860 rcrQ 5977129..5979036 (-) 1908 WP_040253866.1 ABC transporter ATP-binding protein Regulator
  MID12_RS23865 rcrP 5979054..5980790 (-) 1737 WP_040253868.1 ABC transporter ATP-binding protein Regulator
  MID12_RS23870 - 5980953..5982398 (-) 1446 WP_040253870.1 FGGY family carbohydrate kinase -
  MID12_RS23875 - 5982501..5982803 (-) 303 WP_040253872.1 hypothetical protein -
  MID12_RS23890 - 5983470..5984096 (+) 627 WP_263170622.1 DUF6230 family protein -
  MID12_RS23895 - 5984417..5985055 (+) 639 WP_168540781.1 DUF6230 family protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62960.23 Da        Isoelectric Point: 6.1967

>NTDB_id=567653 MID12_RS23865 WP_040253868.1 5979054..5980790(-) (rcrP) [Streptomyces sp. SCSIO ZS0520]
MLIRLLRAYLVPYRKPIGLLVLLQFLQTCATLYLPTLNADIIDNGVVKGDSGYILSFGAVMLAVTVVQMVCNIGAVYYGA
RTAAALGRDLRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQIQMLALLSCTLMVSAPIMCVGGIVMALGQDVPLSAV
LLAVVPVLAVSVGLIVRRMRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDDYERRRFGEVNTELTDVALGTGRLLAL
MFPIVMTVVNVSSLAVVWFGAHRIDSGAMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERVQEVLSTESSVVP
PADPVRELATRGRLEIRAAGFRYPGAEEPVLREIVLNARPGETTAVIGSTGSGKSTLLGLVPRLFDVTEGQVLVGGVDVR
EIDPKLLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQARDFVENTLEGGLDAALSQGGTNVSGGQRQR
LAIARTLVQRPEIYLFDDSFSALDYATDAALRRAMRQETAEATVVIVAQRVSTIREADRILVLDEGRVVGSGRHHELMES
SETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=567653 MID12_RS23865 WP_040253868.1 5979054..5980790(-) (rcrP) [Streptomyces sp. SCSIO ZS0520]
GTGCTCATACGACTGCTGCGGGCCTATCTGGTCCCGTACCGAAAACCGATCGGACTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACGCTCTATCTGCCCACCCTGAACGCCGACATCATCGACAACGGTGTCGTCAAGGGCGACTCCGGCTACA
TCCTCTCCTTCGGGGCGGTGATGCTCGCCGTCACCGTCGTCCAGATGGTCTGCAACATCGGCGCCGTCTACTACGGCGCG
CGGACCGCCGCCGCGCTCGGCCGGGACCTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGGGCGCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGCGCTGCTCAGCTGCA
CGCTGATGGTCTCCGCGCCGATCATGTGCGTCGGCGGCATCGTGATGGCGCTCGGCCAGGACGTGCCGCTGTCGGCGGTC
CTGCTCGCGGTCGTCCCGGTCCTCGCGGTCAGCGTCGGCCTGATCGTGCGCCGGATGCGGCCGCTGTTCCGCAGCATGCA
GAAGCGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACG
ACTACGAGCGGCGGCGCTTCGGCGAGGTCAACACCGAGCTGACGGATGTCGCGCTCGGCACCGGGCGCCTGCTCGCGCTG
ATGTTCCCCATCGTGATGACCGTGGTGAACGTGTCCTCGCTCGCGGTGGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
CGCCATGGAGATCGGCGCGCTCACCGCCTTCCTCGCCTATCTGATGCAGATCGTGATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCGTCCAGGAGGTCCTCTCCACCGAGAGCAGCGTGGTGCCC
CCGGCCGATCCGGTGCGCGAACTGGCCACCCGCGGACGCCTGGAGATCCGCGCGGCGGGCTTCCGCTATCCCGGCGCCGA
GGAGCCCGTGCTCCGCGAGATCGTGCTCAACGCGCGGCCCGGGGAGACCACCGCGGTGATCGGTTCGACCGGCAGCGGCA
AGTCGACACTGCTCGGCCTGGTCCCGCGGCTCTTCGACGTCACCGAGGGGCAGGTCCTGGTCGGCGGCGTGGACGTACGC
GAGATCGATCCGAAGCTGCTCGCGCGCACGGTCGGCCTGGTCCCGCAGAAGCCGTATCTGTTCGCCGGGACCGTGGCCAC
CAATCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTCTGGCACGCCCTGGAGGTCGCCCAGGCGCGGGACTTCG
TGGAGAACACGCTGGAGGGCGGGCTCGACGCGGCCCTCTCCCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGCCAGCGG
CTCGCGATCGCGCGGACCCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCCAC
CGACGCGGCCCTGCGCCGGGCGATGCGCCAGGAGACCGCGGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCCACCA
TCCGCGAGGCGGACCGGATCCTGGTCCTGGACGAGGGGCGGGTGGTCGGCAGCGGGCGCCACCACGAGCTGATGGAGTCC
AGCGAGACCTACCGGGAGATCGTCCTCTCCCAGCTCACGGAAGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-499)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.037

97.059

0.379