Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   MID12_RS23860 Genome accession   NZ_CP092644
Coordinates   5977129..5979036 (-) Length   635 a.a.
NCBI ID   WP_040253866.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5972129..5984036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS23845 - 5972685..5975339 (-) 2655 WP_263170617.1 protein kinase domain-containing protein -
  MID12_RS23850 - 5975473..5975985 (-) 513 WP_263170619.1 MmpS family protein -
  MID12_RS23855 - 5976182..5977057 (+) 876 WP_263170620.1 PhzF family phenazine biosynthesis protein -
  MID12_RS23860 rcrQ 5977129..5979036 (-) 1908 WP_040253866.1 ABC transporter ATP-binding protein Regulator
  MID12_RS23865 rcrP 5979054..5980790 (-) 1737 WP_040253868.1 ABC transporter ATP-binding protein Regulator
  MID12_RS23870 - 5980953..5982398 (-) 1446 WP_040253870.1 FGGY family carbohydrate kinase -
  MID12_RS23875 - 5982501..5982803 (-) 303 WP_040253872.1 hypothetical protein -

Sequence

Protein


Download         Length: 635 a.a.        Molecular weight: 69447.42 Da        Isoelectric Point: 6.0523

>NTDB_id=567652 MID12_RS23860 WP_040253866.1 5977129..5979036(-) (rcrQ) [Streptomyces sp. SCSIO ZS0520]
MMAGQSPDQQSMDFKGSSRRLLRQFRAERVTLSVMLFAVVASVTLSVIGPKILGHATDLIFAGLVGRRMEGGQSREEAIE
RIRRGGDGGVADMLSGLDFTPGQGIDFDRIGLVLLSALLVFLGSGLLMLAGTRLANRAINRTVFRMRAEVQAKLSRLPLS
YFDKRQRGEVLSRATNDLDNLGQTLQQTLGQLINSALTVVGVLVVMFWISPLLALVALVTVPLSYLVATRVGKRSQPHFV
QQWRSTGSLNAHIEEMYSGHSLVKVFGRQEESARQFGEQNTQLYEASYRAQFNSGMMQPLMLFVSNLNYVLVAVVGGLRV
ASGALSIGEVQAFIQYSRQFSQPLTQLASMANLVQSGVASAERIYELLDAEEQLPDREPAERPERLRGRVEFSHVRFRYE
PDRPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYETTGGRITLDGTDIARMTRDELRSGIGMVLQDTWLFGGTI
AENIAYGASREVSREEIEEAARAAHADRFVRTLPEGYDTVIDDEGTGVSAGEKQLLTIARAFLSDPVILVLDEATSSVDT
RTEVLIQQAMARLAHGRTSFVIAHRLSTIRGADTILVMADGDIVEQGTHQELLAAKGAYAALYAAQFAQAVAEVD

Nucleotide


Download         Length: 1908 bp        

>NTDB_id=567652 MID12_RS23860 WP_040253866.1 5977129..5979036(-) (rcrQ) [Streptomyces sp. SCSIO ZS0520]
ATGATGGCCGGACAGAGCCCCGACCAGCAGTCGATGGACTTCAAGGGCTCCAGCAGGCGCCTGCTGCGGCAGTTCCGCGC
GGAGCGGGTGACCCTGAGCGTGATGCTGTTCGCGGTGGTGGCCAGCGTCACCCTGTCGGTGATCGGACCGAAGATCCTCG
GGCACGCCACCGACCTGATCTTCGCCGGGCTCGTGGGCCGGCGGATGGAGGGCGGCCAGAGCCGCGAGGAGGCGATCGAG
CGGATCCGGCGCGGCGGGGACGGCGGCGTCGCCGACATGCTGAGCGGCCTCGACTTCACCCCCGGCCAGGGCATCGACTT
CGACCGGATCGGGCTCGTCCTGCTCAGTGCCCTGCTCGTCTTCCTCGGCTCGGGCCTGCTGATGCTGGCGGGCACCCGGC
TCGCCAACCGGGCCATCAACCGCACGGTCTTCCGGATGCGCGCCGAGGTGCAGGCCAAGCTCTCCCGGCTGCCGCTCTCC
TACTTCGACAAGCGCCAGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACCTGGACAACCTGGGCCAGACGCTCCAGCA
GACCCTGGGCCAGCTCATCAACTCGGCGCTGACCGTCGTCGGCGTCCTGGTGGTGATGTTCTGGATCTCCCCGCTGCTCG
CCCTGGTGGCGCTGGTGACGGTGCCGCTGTCGTATCTGGTGGCCACCCGGGTCGGCAAGCGCTCGCAGCCGCACTTCGTG
CAGCAGTGGCGCAGCACCGGCTCGCTCAACGCGCACATCGAGGAGATGTACTCCGGGCACAGCCTGGTCAAGGTCTTCGG
CCGCCAGGAGGAGTCCGCCCGGCAGTTCGGCGAGCAGAACACGCAGCTCTACGAGGCCTCGTACCGGGCGCAGTTCAACA
GCGGGATGATGCAGCCGCTGATGCTCTTCGTCTCCAACCTCAACTACGTACTGGTCGCGGTGGTCGGCGGGCTCAGGGTG
GCCTCGGGCGCGCTGTCGATCGGTGAGGTGCAGGCCTTCATCCAGTATTCGCGGCAGTTCTCGCAGCCGCTGACCCAGCT
CGCCTCGATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCCGCCGAGCGGATCTACGAACTCCTCGACGCCGAGGAGCAGT
TGCCCGACCGGGAACCCGCCGAGCGGCCCGAACGGCTGCGCGGCCGGGTGGAGTTCTCCCATGTCCGCTTCCGCTACGAG
CCGGACCGGCCGCTGATCGAGGACCTGTCGCTGACCGTGGAACCGGGCCACACGGTCGCCATCGTCGGCCCCACGGGCGC
GGGCAAGACCACCCTGGTCAACCTGCTGATGCGCTTCTACGAGACCACCGGCGGCCGCATCACCCTGGACGGCACCGACA
TCGCCCGGATGACCCGGGACGAACTGCGCTCCGGCATCGGCATGGTGCTCCAGGACACCTGGCTGTTCGGCGGCACCATC
GCGGAGAACATCGCCTACGGGGCGTCCCGCGAGGTCAGCCGCGAGGAGATCGAGGAGGCGGCGCGCGCGGCCCACGCGGA
CCGTTTCGTACGCACCCTGCCGGAGGGCTACGACACCGTCATCGACGACGAGGGCACCGGCGTCAGCGCGGGCGAGAAGC
AACTCCTCACCATCGCCAGGGCGTTCCTGTCCGACCCGGTGATACTCGTCCTGGACGAGGCGACCAGCTCGGTGGACACC
CGTACCGAGGTCCTCATCCAGCAGGCGATGGCCCGCCTCGCGCACGGGCGCACCTCGTTCGTCATCGCCCACCGGCTGTC
CACCATCCGCGGCGCCGACACCATCCTGGTGATGGCGGACGGCGACATCGTGGAACAGGGCACCCACCAGGAGCTGCTGG
CCGCCAAGGGTGCCTACGCGGCCCTGTACGCGGCGCAGTTCGCCCAGGCGGTGGCGGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(34-344)

ABC transporter (ABC_tran)

(407-556)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.304

94.173

0.389