Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MID12_RS06075 Genome accession   NZ_CP092644
Coordinates   1786486..1787691 (-) Length   401 a.a.
NCBI ID   WP_040247795.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1781486..1792691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS06060 - 1782645..1784129 (-) 1485 WP_263165299.1 hypothetical protein -
  MID12_RS06065 - 1784641..1785309 (+) 669 WP_263165301.1 bifunctional DNA primase/polymerase -
  MID12_RS06070 - 1785415..1786371 (+) 957 WP_263165303.1 IS481 family transposase -
  MID12_RS06075 pilA 1786486..1787691 (-) 1206 WP_040247795.1 signal recognition particle-docking protein FtsY Machinery gene
  MID12_RS06080 - 1787814..1789238 (-) 1425 WP_040247798.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 401 a.a.        Molecular weight: 41930.92 Da        Isoelectric Point: 4.3660

>NTDB_id=567620 MID12_RS06075 WP_040247795.1 1786486..1787691(-) (pilA) [Streptomyces sp. SCSIO ZS0520]
METVILAVVIAVVVLGALGGLVVGSRRKKQLPPPEAPPTTPDLTAPPTEPQVGDEAGTAAPEARRTVEEVGLPEGAEPSP
DLVEAEAPTPIEVPEPSAGRLVRLRTRLSRSQNALGKGLLTLLSREHLDEDTWEEIEDTLLTADVGVAATTELVDRLRER
VRVLGTRTPAELRTLLREELLALVGPDLDRTVHTESPLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKIVLLGAADTF
RAAAADQLETWGERVGALTVRGPEAGDPASVAFDAVKEGAETGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLDE
VLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALIG
D

Nucleotide


Download         Length: 1206 bp        

>NTDB_id=567620 MID12_RS06075 WP_040247795.1 1786486..1787691(-) (pilA) [Streptomyces sp. SCSIO ZS0520]
ATGGAAACCGTCATCCTTGCTGTAGTCATCGCCGTCGTCGTGCTCGGCGCACTCGGCGGGCTCGTCGTCGGCAGCCGCCG
GAAGAAGCAGCTGCCCCCGCCCGAGGCGCCCCCCACCACCCCCGATCTCACCGCCCCGCCCACCGAACCGCAGGTCGGCG
ACGAGGCCGGCACCGCGGCCCCGGAAGCCCGCCGCACCGTCGAGGAGGTCGGGCTGCCCGAGGGCGCCGAGCCCTCGCCG
GACCTCGTCGAGGCCGAGGCGCCCACCCCGATCGAGGTGCCCGAGCCCAGCGCCGGCCGCCTGGTACGGCTGCGCACCCG
GCTCTCCCGCTCCCAGAACGCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGAGCACCTGGACGAGGACACCTGGG
AGGAGATCGAGGACACCCTGCTCACCGCGGACGTCGGTGTCGCCGCGACCACCGAACTCGTCGACCGGCTGCGCGAACGC
GTCCGGGTCCTCGGCACCCGCACCCCCGCCGAGCTGCGCACCCTGCTGCGCGAGGAGCTGCTCGCCCTGGTCGGCCCGGA
CCTGGACCGCACCGTGCACACCGAGTCGCCGCTGGACACCCCGGGCATCGTGATGGTCGTCGGCGTCAACGGCACCGGCA
AGACCACCACCACCGGCAAGCTCGCCCGGGTCCTGGTGGCCGACGGCAAGATCGTGCTGCTCGGCGCCGCCGACACCTTC
CGGGCCGCCGCCGCCGACCAGTTGGAGACCTGGGGCGAGCGGGTCGGCGCGCTGACCGTCCGCGGCCCGGAGGCGGGCGA
CCCCGCCTCGGTCGCCTTCGACGCGGTCAAGGAGGGCGCCGAGACCGGTGCGGACGTCGTCCTCATCGACACCGCGGGGC
GCCTGCACACCAAGACCGGCCTCATGGACGAGCTGGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGCCCCGCTCGACGAG
GTGCTGCTCGTCCTGGACGCCACCACCGGCCAGAACGGCCTGGTGCAGGCACGGGTCTTCGCGGAGGTCGTCGACATCAC
CGGCATCGTGCTGACGAAGCTGGACGGTACGGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCGAACTGGGCGTCCCCG
TCAAGCTCGTCGGCCTCGGCGAGGGCGCCGACGACCTCGCGCCCTTCGAGCCGGAGGCCTTCGTCGACGCCCTGATCGGC
GACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(203-399)

SRP54-type protein, helical bundle domain (SRP54_N)

(115-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.466

87.781

0.382