Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   KH277_RS17495 Genome accession   NZ_CP075054
Coordinates   3555530..3555649 (-) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis strain VTX20     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 3550530..3560649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS17470 (KH277_17460) - 3550769..3551527 (-) 759 WP_015388706.1 ABC transporter ATP-binding protein -
  KH277_RS17475 (KH277_17465) - 3551521..3552468 (-) 948 WP_069448545.1 iron chelate uptake ABC transporter family permease subunit -
  KH277_RS17480 (KH277_17470) ceuB 3552458..3553411 (-) 954 WP_003156332.1 ABC transporter permease Machinery gene
  KH277_RS17485 (KH277_17475) - 3553826..3555190 (+) 1365 WP_014304341.1 aspartate kinase -
  KH277_RS17490 (KH277_17480) - 3555285..3555380 (+) 96 WP_012116800.1 YjcZ family sporulation protein -
  KH277_RS17495 (KH277_17485) phrC 3555530..3555649 (-) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  KH277_RS17500 (KH277_17490) rapC 3555633..3556781 (-) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  KH277_RS17505 (KH277_17495) - 3556934..3558367 (-) 1434 WP_161620115.1 HAMP domain-containing sensor histidine kinase -
  KH277_RS17510 (KH277_17500) - 3558354..3559037 (-) 684 WP_003156341.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=567503 KH277_RS17495 WP_003156334.1 3555530..3555649(-) (phrC) [Bacillus velezensis strain VTX20]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=567503 KH277_RS17495 WP_003156334.1 3555530..3555649(-) (phrC) [Bacillus velezensis strain VTX20]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718