Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MKK05_RS22875 Genome accession   NZ_CP092634
Coordinates   4924023..4925465 (-) Length   480 a.a.
NCBI ID   WP_009878058.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LS.2c     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4919023..4930465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK05_RS22845 (MKK05_22845) - 4919349..4920464 (+) 1116 WP_003110035.1 glycosyltransferase family 1 protein -
  MKK05_RS22850 (MKK05_22850) - 4920457..4921218 (+) 762 WP_003093883.1 DUF2334 domain-containing protein -
  MKK05_RS22855 (MKK05_22855) - 4921215..4922216 (+) 1002 WP_003093885.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  MKK05_RS22860 (MKK05_22860) - 4922191..4922403 (-) 213 WP_003101176.1 hypothetical protein -
  MKK05_RS22865 (MKK05_22865) purU 4922453..4923304 (-) 852 WP_003101174.1 formyltetrahydrofolate deformylase -
  MKK05_RS22870 (MKK05_22870) mvaT 4923564..4923938 (+) 375 WP_003093888.1 histone-like nucleoid-structuring protein MvaT -
  MKK05_RS22875 (MKK05_22875) sbcB 4924023..4925465 (-) 1443 WP_009878058.1 exodeoxyribonuclease I Machinery gene
  MKK05_RS22880 (MKK05_22880) - 4925690..4926427 (+) 738 WP_003101171.1 hypothetical protein -
  MKK05_RS22885 (MKK05_22885) - 4926465..4927261 (+) 797 Protein_4532 RDD family protein -
  MKK05_RS22890 (MKK05_22890) - 4927258..4928238 (+) 981 WP_023092832.1 stage II sporulation protein M -
  MKK05_RS22895 (MKK05_22895) - 4928225..4929805 (+) 1581 WP_023092833.1 DUF4129 domain-containing protein -

Sequence

Protein


Download         Length: 480 a.a.        Molecular weight: 55535.80 Da        Isoelectric Point: 5.4194

>NTDB_id=567490 MKK05_RS22875 WP_009878058.1 4924023..4925465(-) (sbcB) [Pseudomonas aeruginosa strain LS.2c]
MTVNASIFWYDYETTGIDPRRDRPLQIAGIRTDEALNEIGEPMNLYCRPSDDILPHPMACLITGITPQRLAERGLSEADF
MTRVHAQLAQPATCVAGYNSLRFDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDMVRTAYALRPEGIQWPQLDGRLSLK
LEMLTAANGLEHGQAHDALSDVRATIALARLIRQRQPRLYDYLYQLRSKHKVLDQVRLLQPLVHVSGRFSAERHFLSVVL
PLAWHPRNRNALIVCDLCADPAPLLELSAEDLRRRLYTRRDELAEGELPVPLKQIQVNRCPVVAPLSVLRAEDRQRTGIE
LEECQRKAELLRQHQTVWADKLTALYGEESFSASDDPEQQLYDGFIGDRDRRLCEQLRLAEPEQLAKEQWPFDDARLQEL
FFRYRARNFPETLNVDERQQWESFCRNRLSHEEYGAPNTLPAFEAALEACRQEQGGTLPAVLAAWRDYAAELRQRYSLET

Nucleotide


Download         Length: 1443 bp        

>NTDB_id=567490 MKK05_RS22875 WP_009878058.1 4924023..4925465(-) (sbcB) [Pseudomonas aeruginosa strain LS.2c]
ATGACCGTGAACGCGAGTATTTTTTGGTACGACTACGAAACCACCGGCATCGACCCTCGCCGCGACCGGCCGTTGCAGAT
CGCCGGGATCCGCACGGACGAGGCGCTGAACGAGATCGGCGAGCCGATGAACCTGTATTGCCGTCCCAGCGACGATATCC
TGCCTCACCCTATGGCTTGCCTGATCACCGGCATCACCCCCCAGCGGCTGGCCGAGCGGGGGCTGTCCGAGGCCGACTTC
ATGACCCGGGTACACGCCCAGCTGGCGCAGCCGGCGACCTGCGTGGCCGGCTACAACTCCCTGCGCTTCGACGACGAAGT
GACGCGCTACAGCCTGTACCGCAACTTCTTCGATCCCTACGCCCGCGAGTGGCAAGGCGGCAATAGCCGCTGGGACCTGA
TCGACATGGTCCGTACCGCCTATGCCCTGCGCCCGGAGGGCATCCAGTGGCCGCAGCTGGACGGCCGGCTGTCGCTGAAG
CTGGAAATGCTCACCGCGGCAAACGGCCTGGAGCATGGCCAGGCCCACGACGCGCTTTCCGATGTCCGCGCCACCATTGC
CCTGGCCCGCCTGATCCGTCAGCGCCAGCCGCGCCTGTACGATTACCTCTACCAATTGCGCAGCAAGCACAAGGTGCTCG
ACCAGGTGCGCCTGCTGCAGCCGCTGGTGCATGTCTCCGGACGCTTTTCCGCGGAGCGCCATTTCCTCTCGGTGGTCCTG
CCGCTGGCCTGGCACCCGCGCAACCGCAATGCCCTGATCGTCTGCGACCTCTGCGCCGATCCCGCGCCGCTGCTGGAGTT
GTCGGCCGAAGACTTGCGCAGGCGCCTGTATACCCGTCGCGACGAACTGGCCGAGGGCGAGTTGCCGGTGCCGCTGAAGC
AGATCCAGGTCAACCGTTGCCCGGTGGTGGCGCCGCTGTCGGTATTGCGCGCCGAGGATCGCCAGCGAACCGGCATCGAA
CTCGAGGAGTGCCAGCGAAAAGCCGAGCTGTTGCGCCAGCATCAAACCGTCTGGGCGGACAAACTGACAGCGCTATATGG
CGAAGAAAGTTTCTCCGCCAGCGACGACCCCGAGCAACAGTTGTATGACGGATTTATTGGCGATCGAGATCGACGCCTTT
GTGAACAGCTGCGCCTTGCCGAACCGGAGCAATTGGCCAAAGAACAATGGCCCTTCGACGATGCCCGTTTGCAGGAGTTG
TTCTTCCGCTATCGTGCGCGAAATTTCCCGGAAACTTTAAATGTGGACGAGCGCCAACAATGGGAAAGCTTCTGCCGCAA
TCGTTTGTCCCATGAAGAATACGGCGCACCGAATACTTTGCCGGCCTTCGAGGCGGCGCTGGAGGCTTGTCGGCAAGAGC
AGGGCGGCACATTGCCGGCGGTACTTGCGGCCTGGCGCGATTACGCCGCGGAACTGCGTCAACGCTATTCGCTGGAGACT
TGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(207-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

49.647

88.542

0.44