Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   KH277_RS12180 Genome accession   NZ_CP075054
Coordinates   2551978..2552442 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus velezensis strain VTX20     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 2546978..2557442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS19240 - 2547491..2548036 (-) 546 Protein_2393 hypothetical protein -
  KH277_RS12160 (KH277_12160) fadH 2548147..2548911 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  KH277_RS12165 (KH277_12165) - 2549055..2549918 (+) 864 WP_063174788.1 metallophosphoesterase -
  KH277_RS12170 (KH277_12170) - 2549993..2550487 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  KH277_RS12175 (KH277_12175) - 2550563..2551855 (+) 1293 WP_024085236.1 MFS transporter -
  KH277_RS12180 (KH277_12180) kre 2551978..2552442 (+) 465 WP_003154622.1 YkyB family protein Regulator
  KH277_RS12185 (KH277_12185) cheV 2552485..2553396 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  KH277_RS12190 (KH277_12190) - 2553585..2553746 (+) 162 WP_007409608.1 hypothetical protein -
  KH277_RS12195 (KH277_12195) - 2553947..2555116 (+) 1170 WP_044053155.1 aminotransferase A -
  KH277_RS12200 (KH277_12200) - 2555142..2556962 (-) 1821 WP_213390648.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=567484 KH277_RS12180 WP_003154622.1 2551978..2552442(+) (kre) [Bacillus velezensis strain VTX20]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=567484 KH277_RS12180 WP_003154622.1 2551978..2552442(+) (kre) [Bacillus velezensis strain VTX20]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929