Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   KH277_RS12080 Genome accession   NZ_CP075054
Coordinates   2535986..2536582 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX20     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2530986..2541582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS12055 (KH277_12055) mobB 2531362..2531883 (-) 522 WP_041482361.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  KH277_RS12060 (KH277_12060) glp 2531844..2533136 (-) 1293 WP_213390645.1 gephyrin-like molybdotransferase Glp -
  KH277_RS12065 (KH277_12065) - 2533154..2534173 (-) 1020 WP_213390646.1 molybdopterin-synthase adenylyltransferase MoeB -
  KH277_RS12070 (KH277_12070) - 2534225..2534827 (-) 603 WP_015388303.1 molybdenum cofactor guanylyltransferase -
  KH277_RS12075 (KH277_12075) - 2534973..2535965 (+) 993 WP_014304925.1 hypothetical protein -
  KH277_RS12080 (KH277_12080) rok 2535986..2536582 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  KH277_RS12085 (KH277_12085) - 2537034..2537492 (-) 459 WP_014304924.1 TlpA disulfide reductase family protein -
  KH277_RS12090 (KH277_12090) - 2537780..2538586 (+) 807 WP_003154595.1 mechanosensitive ion channel family protein -
  KH277_RS12095 (KH277_12095) - 2538620..2538865 (-) 246 WP_003154596.1 YkuS family protein -
  KH277_RS12100 (KH277_12100) - 2538926..2540050 (-) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  KH277_RS12105 (KH277_12105) dapD 2540121..2540831 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  KH277_RS12110 (KH277_12110) - 2540913..2541368 (-) 456 WP_048367197.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=567483 KH277_RS12080 WP_003154591.1 2535986..2536582(-) (rok) [Bacillus velezensis strain VTX20]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=567483 KH277_RS12080 WP_003154591.1 2535986..2536582(-) (rok) [Bacillus velezensis strain VTX20]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843