Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KH277_RS09000 Genome accession   NZ_CP075054
Coordinates   1777207..1777815 (-) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX20     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1772207..1782815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS08980 (KH277_08980) dnaD 1772443..1773141 (+) 699 WP_003153516.1 DNA replication protein DnaD -
  KH277_RS08985 (KH277_08985) nth 1773160..1773819 (+) 660 WP_003153517.1 endonuclease III -
  KH277_RS08990 (KH277_08990) - 1773816..1774307 (+) 492 WP_094760532.1 YpoC family protein -
  KH277_RS08995 (KH277_08995) - 1774385..1777168 (-) 2784 WP_094760533.1 PBP1A family penicillin-binding protein -
  KH277_RS09000 (KH277_09000) recU 1777207..1777815 (-) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  KH277_RS09005 (KH277_09005) - 1777857..1778819 (+) 963 WP_014305287.1 DUF2515 domain-containing protein -
  KH277_RS09010 (KH277_09010) sspM 1778863..1778967 (-) 105 WP_003153525.1 acid-soluble spore protein SspM -
  KH277_RS09015 (KH277_09015) - 1779173..1779418 (+) 246 WP_014305286.1 DUF5446 family protein -
  KH277_RS09020 (KH277_09020) - 1779464..1779832 (+) 369 WP_003153529.1 YppE family protein -
  KH277_RS09025 (KH277_09025) - 1779871..1780053 (-) 183 WP_003153532.1 YppF family protein -
  KH277_RS09030 (KH277_09030) - 1780240..1780641 (+) 402 WP_213391019.1 YppG family protein -
  KH277_RS09035 (KH277_09035) - 1780671..1781084 (-) 414 WP_213391020.1 Hsp20/alpha crystallin family protein -
  KH277_RS09040 (KH277_09040) - 1781223..1781729 (+) 507 WP_058906138.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=567477 KH277_RS09000 WP_003153521.1 1777207..1777815(-) (recU) [Bacillus velezensis strain VTX20]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=567477 KH277_RS09000 WP_003153521.1 1777207..1777815(-) (recU) [Bacillus velezensis strain VTX20]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896