Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   KH277_RS06635 Genome accession   NZ_CP075054
Coordinates   1297512..1298264 (+) Length   250 a.a.
NCBI ID   WP_171463572.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX20     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1292512..1303264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS06620 (KH277_06620) - 1292735..1292926 (-) 192 WP_003152639.1 hypothetical protein -
  KH277_RS06625 (KH277_06625) - 1293379..1296021 (+) 2643 WP_003152640.1 valine--tRNA ligase -
  KH277_RS06630 (KH277_06630) - 1296080..1297372 (+) 1293 WP_213390977.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  KH277_RS06635 (KH277_06635) comC 1297512..1298264 (+) 753 WP_171463572.1 A24 family peptidase Machinery gene
  KH277_RS06640 (KH277_06640) - 1298391..1299392 (+) 1002 WP_003152644.1 SPOR domain-containing protein -
  KH277_RS06645 (KH277_06645) - 1299533..1300102 (+) 570 WP_014305513.1 Maf family protein -
  KH277_RS06650 (KH277_06650) radC 1300134..1300829 (+) 696 WP_007408165.1 DNA repair protein RadC -
  KH277_RS06655 (KH277_06655) mreB 1300921..1301934 (+) 1014 WP_003152647.1 cell shape-determining protein MreB -
  KH277_RS06660 (KH277_06660) mreC 1301965..1302828 (+) 864 WP_003152649.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27168.84 Da        Isoelectric Point: 9.2521

>NTDB_id=567460 KH277_RS06635 WP_171463572.1 1297512..1298264(+) (comC) [Bacillus velezensis strain VTX20]
MLLILFFLGLIFGSFFYTAACRIPLRISVISPRSSCSFCRLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYLAAECWTA
CLFTAAGIHFGFSKELLVALLFLSLLMIVTMTDLQYMLIPDKVLLFFLPLFIAGRMFSPLDSWYAGFAGAVCGFFLLVFI
MFVSKGGIGAGDVKLFGVIGLTLGVKLVLIAFFLSVMIGAVYGMCAAARGSLGKKQPFPFAPAISAGSALSYLYGDELFS
FYIKLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=567460 KH277_RS06635 WP_171463572.1 1297512..1298264(+) (comC) [Bacillus velezensis strain VTX20]
GTGCTTTTAATTCTGTTTTTTCTCGGCTTGATTTTCGGTTCTTTTTTTTATACAGCAGCGTGCCGTATCCCGCTGCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTTTGCCGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTCGTCTCCT
ATATTCTGCAAAGAGGCAGATGCAGAAACTGCCGTGCGAAGCTGTCGGTTATGTATCTGGCGGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCAGGCATTCATTTCGGTTTCTCAAAAGAACTGTTAGTCGCGCTGTTATTTCTGTCTCTCCTCAT
GATTGTTACTATGACGGATCTGCAATATATGCTGATTCCTGACAAAGTTCTGCTGTTTTTTCTTCCGCTTTTCATCGCCG
GCCGTATGTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCCGTTTGCGGATTTTTTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAACTGTTTGGGGTGATCGGCCTGACGCTCGGCGTGAAGCT
CGTGCTCATTGCATTCTTTCTTTCCGTTATGATCGGAGCGGTATACGGTATGTGCGCCGCAGCCCGGGGCAGTCTTGGTA
AAAAGCAGCCATTTCCGTTTGCGCCGGCCATCTCAGCCGGGAGCGCTTTGAGTTATTTATACGGTGATGAGCTGTTTTCG
TTTTACATCAAGCTCGCTTCAGGCGGGGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(8-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.871

99.2

0.584