Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   MKK05_RS01900 Genome accession   NZ_CP092634
Coordinates   409294..410649 (+) Length   451 a.a.
NCBI ID   WP_004365026.1    Uniprot ID   A0A0H2ZKT5
Organism   Pseudomonas aeruginosa strain LS.2c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404294..415649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK05_RS01880 (MKK05_01880) - 405131..405697 (-) 567 WP_003084491.1 hypothetical protein -
  MKK05_RS01885 (MKK05_01885) rsmD 405700..406296 (-) 597 WP_003102864.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MKK05_RS01890 (MKK05_01890) - 406296..407783 (-) 1488 WP_023095110.1 pitrilysin family protein -
  MKK05_RS01895 (MKK05_01895) - 407776..409173 (-) 1398 WP_079381361.1 pitrilysin family protein -
  MKK05_RS01900 (MKK05_01900) pilA 409294..410649 (+) 1356 WP_004365026.1 signal recognition particle-docking protein FtsY Machinery gene
  MKK05_RS01905 (MKK05_01905) ftsE 410646..411317 (+) 672 WP_003084505.1 cell division ATP-binding protein FtsE -
  MKK05_RS01910 (MKK05_01910) ftsX 411317..412324 (+) 1008 WP_003084508.1 permease-like cell division protein FtsX -
  MKK05_RS01915 (MKK05_01915) rpoH 412437..413291 (+) 855 WP_003084510.1 RNA polymerase sigma factor RpoH -
  MKK05_RS01920 (MKK05_01920) - 413356..413961 (+) 606 WP_003084511.1 hypothetical protein -
  MKK05_RS01925 (MKK05_01925) mtgA 413966..414697 (-) 732 WP_003100972.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  MKK05_RS01930 (MKK05_01930) - 414734..415111 (+) 378 WP_003084513.1 DUF423 domain-containing protein -
  MKK05_RS01935 (MKK05_01935) thiS 415214..415414 (+) 201 WP_003084514.1 sulfur carrier protein ThiS -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 47939.36 Da        Isoelectric Point: 4.5795

>NTDB_id=567436 MKK05_RS01900 WP_004365026.1 409294..410649(+) (pilA) [Pseudomonas aeruginosa strain LS.2c]
MFGSNDDKKAPQGGEKKGLFGWWRKKPQAGEQPADQPVEPVSETAAAEQRAPADDVAQSLTEQPGRQQPSAAEPAEPPAP
VAEAPLAGDEPASAEEHSPRPEAPVAQPEPILAAEPEPEPEPEPEPVAPLAAAPAVSEPATRPGFFARLRQGLSKTSASI
GEGMASLFLGRKEIDDDLLDDIETRLLTADVGVEATTLIVQNLTKRVARKELADSGALYKALQEELASLLRPVEQPLQVD
VAREPYVILVVGVNGVGKTTTIGKLAKKLQLEGKKVMLAAGDTFRAAAVEQLQVWGERNRIPVIAQHTGADSASVIFDAV
QAAKARGIDVLIADTAGRLHTKDNLMEELKKVRRVIGKLDETAPHEVLLVLDAGTGQNAINQAKQFNLAVELTGLALTKL
DGTAKGGVIFALAKQFGLPIRYIGVGEGIDDLRTFEADAFVQALFAERENA

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=567436 MKK05_RS01900 WP_004365026.1 409294..410649(+) (pilA) [Pseudomonas aeruginosa strain LS.2c]
ATGTTTGGTTCCAACGACGACAAGAAGGCCCCGCAGGGCGGGGAAAAGAAAGGTCTGTTCGGCTGGTGGCGGAAAAAGCC
GCAAGCCGGCGAGCAGCCTGCCGATCAGCCTGTCGAGCCGGTCTCCGAGACAGCGGCCGCCGAGCAGCGCGCGCCTGCCG
ATGACGTGGCGCAATCCCTGACAGAACAGCCAGGTCGGCAGCAGCCCTCCGCTGCCGAGCCGGCCGAGCCGCCGGCGCCG
GTTGCCGAAGCGCCGCTCGCCGGTGACGAGCCAGCATCGGCCGAGGAGCATTCGCCCCGGCCCGAGGCGCCCGTCGCGCA
ACCCGAGCCTATCCTGGCTGCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGAGCCCGTTGCGCCGCTGGCCGCCGCTC
CGGCAGTCAGCGAGCCGGCGACCAGGCCGGGCTTCTTCGCCCGCCTCCGGCAGGGACTGTCCAAGACCAGCGCCAGCATC
GGCGAAGGCATGGCCAGCCTGTTCCTCGGCCGCAAGGAAATCGACGACGACCTGCTCGACGACATCGAGACGCGCCTGCT
GACCGCCGACGTCGGCGTCGAGGCCACCACCCTGATCGTGCAGAACCTGACCAAGCGCGTGGCGCGCAAGGAGCTGGCCG
ACAGCGGTGCGCTGTACAAAGCGCTGCAGGAAGAGCTGGCCAGCCTGCTGCGCCCGGTGGAGCAGCCGTTGCAGGTCGAC
GTCGCGCGCGAGCCCTATGTGATCCTGGTGGTCGGGGTGAACGGCGTGGGCAAGACCACCACCATCGGCAAGCTGGCGAA
GAAGCTGCAACTCGAGGGCAAGAAGGTCATGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCCGTGGAGCAGTTGCAGG
TCTGGGGCGAGCGCAACCGCATCCCGGTGATCGCCCAGCACACCGGCGCCGACTCCGCCTCGGTGATCTTCGACGCGGTG
CAGGCCGCCAAGGCCCGCGGCATCGACGTGCTGATCGCCGATACCGCCGGACGCCTGCATACCAAGGACAACCTGATGGA
GGAGCTGAAGAAGGTGCGCCGGGTGATCGGCAAGCTGGACGAGACGGCGCCCCATGAGGTCCTGCTGGTGCTCGACGCCG
GCACCGGGCAGAACGCCATCAACCAGGCCAAGCAGTTCAACCTCGCGGTGGAGCTGACCGGCCTGGCCCTGACCAAACTG
GACGGCACCGCCAAGGGCGGGGTGATCTTCGCCCTGGCCAAGCAGTTCGGCCTGCCGATCCGCTATATCGGTGTCGGCGA
GGGGATCGACGATCTCCGTACCTTCGAGGCCGACGCCTTCGTCCAGGCACTCTTCGCAGAGCGGGAGAACGCATGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(246-445)

SRP54-type protein, helical bundle domain (SRP54_N)

(161-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKT5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

47.344

96.009

0.455