Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   KIV12_RS16600 Genome accession   NZ_CP075052
Coordinates   3257847..3258425 (-) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain LZP 02     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252847..3263425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS16580 (KIV12_16580) - 3252946..3254115 (-) 1170 WP_058337508.1 MFS transporter -
  KIV12_RS16585 (KIV12_16585) - 3254258..3255697 (+) 1440 WP_217967383.1 PLP-dependent aminotransferase family protein -
  KIV12_RS16590 (KIV12_16590) - 3255728..3256210 (-) 483 WP_138278362.1 hypothetical protein -
  KIV12_RS16595 (KIV12_16595) - 3256597..3257703 (-) 1107 WP_217967384.1 D-TA family PLP-dependent enzyme -
  KIV12_RS16600 (KIV12_16600) comK 3257847..3258425 (-) 579 WP_017366958.1 competence protein ComK Regulator
  KIV12_RS16605 (KIV12_16605) - 3258715..3258945 (+) 231 WP_003210924.1 IDEAL domain-containing protein -
  KIV12_RS16610 (KIV12_16610) - 3259010..3259870 (-) 861 WP_046343106.1 SDR family oxidoreductase -
  KIV12_RS16615 (KIV12_16615) - 3260013..3261545 (+) 1533 WP_144626468.1 FAD-dependent oxidoreductase -
  KIV12_RS16620 (KIV12_16620) - 3261571..3262932 (+) 1362 WP_370539267.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=567433 KIV12_RS16600 WP_017366958.1 3257847..3258425(-) (comK) [Bacillus altitudinis strain LZP 02]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=567433 KIV12_RS16600 WP_017366958.1 3257847..3258425(-) (comK) [Bacillus altitudinis strain LZP 02]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATATCACACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTATCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615