Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KIV12_RS14785 Genome accession   NZ_CP075052
Coordinates   2906858..2907136 (-) Length   92 a.a.
NCBI ID   WP_017359400.1    Uniprot ID   A0A9X0FXL5
Organism   Bacillus altitudinis strain LZP 02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2901858..2912136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS14770 (KIV12_14770) - 2903848..2904516 (-) 669 WP_008345123.1 potassium channel family protein -
  KIV12_RS14775 (KIV12_14775) - 2904554..2905396 (-) 843 WP_073413361.1 gamma-glutamylcyclotransferase -
  KIV12_RS14780 (KIV12_14780) - 2905424..2906713 (-) 1290 WP_017359399.1 ATP-binding protein -
  KIV12_RS14785 (KIV12_14785) abrB 2906858..2907136 (-) 279 WP_017359400.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KIV12_RS14790 (KIV12_14790) mreBH 2907413..2908420 (+) 1008 WP_017359401.1 rod-share determining protein MreBH -
  KIV12_RS14795 (KIV12_14795) - 2908495..2908626 (+) 132 WP_003210922.1 protein YkpC -
  KIV12_RS14800 (KIV12_14800) - 2908734..2909966 (+) 1233 WP_217967254.1 aminopeptidase -
  KIV12_RS14805 (KIV12_14805) - 2910501..2911322 (-) 822 WP_017367170.1 RES family NAD+ phosphorylase -
  KIV12_RS19325 - 2911306..2911845 (+) 540 WP_235701762.1 chemotaxis protein CheA -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10305.97 Da        Isoelectric Point: 4.5332

>NTDB_id=567418 KIV12_RS14785 WP_017359400.1 2906858..2907136(-) (abrB) [Bacillus altitudinis strain LZP 02]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=567418 KIV12_RS14785 WP_017359400.1 2906858..2907136(-) (abrB) [Bacillus altitudinis strain LZP 02]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.348

100

0.543