Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KIV12_RS10000 Genome accession   NZ_CP075052
Coordinates   1993897..1994667 (+) Length   256 a.a.
NCBI ID   WP_217966990.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1988897..1999667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS09970 (KIV12_09970) - 1989203..1991317 (+) 2115 WP_413227376.1 HD family phosphohydrolase -
  KIV12_RS09975 (KIV12_09975) ybeY 1991318..1991797 (+) 480 WP_217966989.1 rRNA maturation RNase YbeY -
  KIV12_RS09980 (KIV12_09980) - 1991775..1992161 (+) 387 WP_024718818.1 diacylglycerol kinase family protein -
  KIV12_RS09985 (KIV12_09985) - 1992274..1992672 (+) 399 WP_008342410.1 cytidine deaminase -
  KIV12_RS09990 (KIV12_09990) era 1992665..1993570 (+) 906 WP_007501305.1 GTPase Era -
  KIV12_RS09995 (KIV12_09995) - 1993718..1993861 (+) 144 WP_008342408.1 YqzL family protein -
  KIV12_RS10000 (KIV12_10000) recO 1993897..1994667 (+) 771 WP_217966990.1 DNA repair protein RecO Machinery gene
  KIV12_RS10005 (KIV12_10005) glyQ 1994997..1995884 (+) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  KIV12_RS10010 (KIV12_10010) glyS 1995877..1997922 (+) 2046 WP_178896840.1 glycine--tRNA ligase subunit beta -
  KIV12_RS10015 (KIV12_10015) - 1998089..1998727 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  KIV12_RS10020 (KIV12_10020) - 1998753..1999574 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29304.98 Da        Isoelectric Point: 8.4335

>NTDB_id=567406 KIV12_RS10000 WP_217966990.1 1993897..1994667(+) (recO) [Bacillus altitudinis strain LZP 02]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKTGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMMESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGLKPELDQCVHCGQKEG
QFHFSIRDNGFICKQCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMDGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=567406 KIV12_RS10000 WP_217966990.1 1993897..1994667(+) (recO) [Bacillus altitudinis strain LZP 02]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAACTGGTGTGATGGCAAGGGGCGCTAAGAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGTGAAATGATGGAAAGCATGCGAACC
ATTCGGGAAGATTTATTTCTGACCGCATATGCCGCATATATGACAGAATTACTTGATAAAGGAACAGAAGAAAAGAAGCC
AAACCCTTACTTGTTTGAACTTCTTCTTCAATCTTTACGCCATCTCAATGAAGGCACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTTAAAATGCTGTCAGTGATGGGGTTGAAGCCTGAACTGGACCAATGTGTACACTGCGGTCAAAAAGAAGGG
CAGTTCCACTTCTCAATTAGAGATAACGGATTCATCTGTAAGCAATGCTTTTCTAAAGATCCATATAAACTGCCCTTATC
CCCAGCAGCAGCAAGACTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGACGTGAAACCACAAA
CGAAACAAGAAATTCGTCAAGTGCTCGATCATTATTATGAAGAGTATTCAGGTCTTTATTTAAAATCAAAAAAATTCATG
AATCAAATGGAATCCATGAAAAAGCTAATGGACGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754