Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   KIV12_RS02580 Genome accession   NZ_CP075052
Coordinates   545915..547027 (-) Length   370 a.a.
NCBI ID   WP_007497487.1    Uniprot ID   A0A9X0KBN2
Organism   Bacillus altitudinis strain LZP 02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540915..552027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS02565 (KIV12_02565) gyrA 540939..543443 (-) 2505 WP_008347605.1 DNA gyrase subunit A -
  KIV12_RS02570 (KIV12_02570) gyrB 543678..545594 (-) 1917 WP_024718422.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  KIV12_RS02575 (KIV12_02575) remB 545652..545897 (-) 246 WP_024718423.1 extracellular matrix regulator RemB -
  KIV12_RS02580 (KIV12_02580) recF 545915..547027 (-) 1113 WP_007497487.1 DNA replication/repair protein RecF Machinery gene
  KIV12_RS02585 (KIV12_02585) yaaA 547044..547259 (-) 216 WP_008347598.1 S4 domain-containing protein YaaA -
  KIV12_RS02590 (KIV12_02590) dnaN 547410..548546 (-) 1137 WP_008347596.1 DNA polymerase III subunit beta -
  KIV12_RS02595 (KIV12_02595) dnaA 548743..550083 (-) 1341 WP_008347594.1 chromosomal replication initiator protein DnaA -
  KIV12_RS02600 (KIV12_02600) rpmH 550704..550838 (+) 135 WP_008360908.1 50S ribosomal protein L34 -
  KIV12_RS02605 (KIV12_02605) rnpA 550917..551276 (+) 360 WP_008347592.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42574.65 Da        Isoelectric Point: 7.1297

>NTDB_id=567383 KIV12_RS02580 WP_007497487.1 545915..547027(-) (recF) [Bacillus altitudinis strain LZP 02]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDEDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILTQR
NHYLKQLQTRKQTDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=567383 KIV12_RS02580 WP_007497487.1 545915..547027(-) (recF) [Bacillus altitudinis strain LZP 02]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
GATGATTGGTGAGAACGCCCAAGGTAAAACGAACCTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACGAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCCATGCAGCTCGTGATCTCAAAAAAAGGAAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAACTCAGTCATTA
TGTTGGTGCCTTGAACACCATCATGTTTGCACCAGAGGATCTCAGCCTTGTGAAAGGTAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTGTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTCACTCAGCGA
AATCATTACTTGAAACAATTGCAAACAAGAAAGCAAACGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAGGTTGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGTTGCATTTTGGGA
TTTCAAGAGAGCTGGAAACGCTCACGCTCCAATACCAGACGGCCATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAAAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGGGTGACGCTATGGGGGCCTCACAG
AGATGATCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATTCATGAAGAAATCGGTGAATACCCAATTCTTCTGCTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

83.198

99.73

0.83