Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KIV12_RS02345 Genome accession   NZ_CP075052
Coordinates   502744..503034 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 497744..508034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS02330 (KIV12_02330) - 497928..499130 (-) 1203 WP_041506540.1 G5 and 3D domain-containing protein -
  KIV12_RS02335 (KIV12_02335) - 499375..500142 (-) 768 WP_017359325.1 TatD family hydrolase -
  KIV12_RS02340 (KIV12_02340) metG 500224..502224 (-) 2001 WP_217967625.1 methionine--tRNA ligase -
  KIV12_RS02345 (KIV12_02345) abrB 502744..503034 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KIV12_RS02350 (KIV12_02350) rsmI 503079..503960 (-) 882 WP_039170319.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KIV12_RS02355 (KIV12_02355) - 503935..504234 (-) 300 WP_024719353.1 GIY-YIG nuclease family protein -
  KIV12_RS02360 (KIV12_02360) - 504221..504964 (-) 744 WP_017359328.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KIV12_RS02365 (KIV12_02365) yabA 505020..505373 (-) 354 WP_007496228.1 DNA replication initiation control protein YabA -
  KIV12_RS02370 (KIV12_02370) - 505388..506215 (-) 828 WP_024719352.1 stage 0 sporulation family protein -
  KIV12_RS02375 (KIV12_02375) holB 506218..507207 (-) 990 WP_024719351.1 DNA polymerase III subunit delta' -
  KIV12_RS02380 (KIV12_02380) - 507219..507659 (-) 441 WP_008341898.1 YaaR family protein -
  KIV12_RS02385 (KIV12_02385) - 507672..508001 (-) 330 WP_012008640.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=567381 KIV12_RS02345 WP_087975202.1 502744..503034(+) (abrB) [Bacillus altitudinis strain LZP 02]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=567381 KIV12_RS02345 WP_087975202.1 502744..503034(+) (abrB) [Bacillus altitudinis strain LZP 02]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAGCTTCGCCGTAC
GTTAGGAATCGCAGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCTTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938