Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   KIV12_RS00605 Genome accession   NZ_CP075052
Coordinates   172214..172642 (+) Length   142 a.a.
NCBI ID   WP_007498233.1    Uniprot ID   A0AAU7FLT6
Organism   Bacillus altitudinis strain LZP 02     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 167214..177642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS00595 (KIV12_00595) - 167801..169786 (-) 1986 WP_217967566.1 hydantoinase B/oxoprolinase family protein -
  KIV12_RS00600 (KIV12_00600) - 169776..171845 (-) 2070 WP_217967567.1 hydantoinase/oxoprolinase family protein -
  KIV12_RS00605 (KIV12_00605) nucA/comI 172214..172642 (+) 429 WP_007498233.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  KIV12_RS00610 (KIV12_00610) - 172769..174466 (+) 1698 WP_144679657.1 methyl-accepting chemotaxis protein -
  KIV12_RS00615 (KIV12_00615) comJ 174604..174990 (+) 387 WP_217967568.1 competence protein ComJ -
  KIV12_RS00620 (KIV12_00620) - 174992..175798 (-) 807 WP_217967569.1 aminoglycoside N(3)-acetyltransferase -
  KIV12_RS00625 (KIV12_00625) - 175823..176242 (-) 420 WP_024718958.1 Lrp/AsnC family transcriptional regulator -
  KIV12_RS00630 (KIV12_00630) - 176358..177122 (+) 765 WP_058336345.1 MBL fold metallo-hydrolase -
  KIV12_RS00635 (KIV12_00635) - 177169..177498 (-) 330 WP_017366586.1 YckD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15926.90 Da        Isoelectric Point: 6.4881

>NTDB_id=567378 KIV12_RS00605 WP_007498233.1 172214..172642(+) (nucA/comI) [Bacillus altitudinis strain LZP 02]
MKLLKTILLLLLIVIGIATGYVQLGQHKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKNSDEQRDKS
LHGIPTKRGYDRDEWPMAMCKEGGAGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIIE

Nucleotide


Download         Length: 429 bp        

>NTDB_id=567378 KIV12_RS00605 WP_007498233.1 172214..172642(+) (nucA/comI) [Bacillus altitudinis strain LZP 02]
ATGAAACTTCTTAAAACCATTCTCTTGCTTTTATTGATTGTCATTGGTATAGCGACAGGCTATGTCCAACTAGGGCAACA
TAAACAAGAGACGACAAACTCTTCTTATGACAAAACCATTCACTTTCCATCAGATCGTTATCCAGAAACTGCGAAGCACA
TAGAAGAAGCTATTGACGAAGGTCATTCTTCCATTTGCACCATTGATCGGAAAAATAGTGATGAGCAAAGAGACAAATCA
CTTCATGGCATTCCAACAAAGCGTGGTTATGATCGTGATGAATGGCCAATGGCGATGTGTAAAGAAGGTGGAGCAGGGGC
TTCTGTCAAATATGTACGTCCTTCGGATAATAGGGGGGCAGGCTCTTGGGTAAGTCATCAATTATCAGATGATCCTGATG
GCACAAGAATCCAATTTATTATCGAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

68.224

75.352

0.514