Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   MKS87_RS09140 Genome accession   NZ_CP092631
Coordinates   1780748..1781179 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain YB-15     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1775748..1786179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS09120 (MKS87_09120) spoVS 1776309..1776569 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  MKS87_RS09125 (MKS87_09125) tdh 1776835..1777878 (+) 1044 WP_014664024.1 L-threonine 3-dehydrogenase -
  MKS87_RS09130 (MKS87_09130) kbl 1777891..1779069 (+) 1179 WP_119899335.1 glycine C-acetyltransferase -
  MKS87_RS09135 (MKS87_09135) miaB 1779217..1780746 (+) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  MKS87_RS09140 (MKS87_09140) ymcA 1780748..1781179 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  MKS87_RS09145 (MKS87_09145) cotE 1781441..1781986 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  MKS87_RS09150 (MKS87_09150) hexA 1782119..1784695 (+) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=567353 MKS87_RS09140 WP_003231834.1 1780748..1781179(+) (ymcA) [Bacillus subtilis strain YB-15]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=567353 MKS87_RS09140 WP_003231834.1 1780748..1781179(+) (ymcA) [Bacillus subtilis strain YB-15]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTATTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1