Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   MKS87_RS08140 Genome accession   NZ_CP092631
Coordinates   1550337..1551362 (+) Length   341 a.a.
NCBI ID   WP_173614066.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1545337..1556362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS08105 (MKS87_08105) ylbE 1545637..1545876 (+) 240 WP_003232231.1 YlbE-like family protein -
  MKS87_RS08110 (MKS87_08110) ylbF 1545992..1546441 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MKS87_RS08115 (MKS87_08115) ylbG 1546496..1546768 (+) 273 WP_015715839.1 YlbG family protein -
  MKS87_RS08120 (MKS87_08120) rsmD 1547091..1547645 (+) 555 WP_160221559.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MKS87_RS08125 (MKS87_08125) coaD 1547650..1548135 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MKS87_RS08130 (MKS87_08130) spoVV 1548146..1549372 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MKS87_RS08135 (MKS87_08135) ylbK 1549553..1550335 (+) 783 WP_003232221.1 patatin family protein -
  MKS87_RS08140 (MKS87_08140) sepM 1550337..1551362 (+) 1026 WP_173614066.1 protease DdcP Regulator
  MKS87_RS08145 (MKS87_08145) ylbM 1551379..1552626 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  MKS87_RS08150 (MKS87_08150) - 1552623..1552808 (-) 186 WP_003232215.1 hypothetical protein -
  MKS87_RS08155 (MKS87_08155) ylbN 1552836..1553354 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  MKS87_RS08160 (MKS87_08160) rpmF 1553376..1553555 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  MKS87_RS08165 (MKS87_08165) gerR 1553701..1554282 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  MKS87_RS08170 (MKS87_08170) ylbP 1554339..1554821 (-) 483 WP_014476736.1 N-acetyltransferase -
  MKS87_RS08175 (MKS87_08175) - 1554981..1555877 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37679.25 Da        Isoelectric Point: 6.5348

>NTDB_id=567342 MKS87_RS08140 WP_173614066.1 1550337..1551362(+) (sepM) [Bacillus subtilis strain YB-15]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEREKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=567342 MKS87_RS08140 WP_173614066.1 1550337..1551362(+) (sepM) [Bacillus subtilis strain YB-15]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTAAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAG
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAAGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATA
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

38.857

100

0.399