Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   MKS87_RS08110 Genome accession   NZ_CP092631
Coordinates   1545992..1546441 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain YB-15     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540992..1551441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS08070 (MKS87_08070) ctaE 1541009..1541632 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  MKS87_RS08075 (MKS87_08075) ctaF 1541635..1541967 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  MKS87_RS08080 (MKS87_08080) ctaG 1541994..1542887 (+) 894 WP_015252153.1 cytochrome c oxidase assembly factor CtaG -
  MKS87_RS08085 (MKS87_08085) ylbA 1542919..1543281 (-) 363 WP_003232238.1 YugN family protein -
  MKS87_RS08090 (MKS87_08090) ylbB 1543421..1543867 (+) 447 WP_003221362.1 CBS domain-containing protein -
  MKS87_RS08095 (MKS87_08095) ylbC 1543951..1544991 (+) 1041 WP_173614065.1 CAP domain-containing protein -
  MKS87_RS08100 (MKS87_08100) ylbD 1545223..1545621 (+) 399 WP_003232233.1 YlbD family protein -
  MKS87_RS08105 (MKS87_08105) ylbE 1545637..1545876 (+) 240 WP_003232231.1 YlbE-like family protein -
  MKS87_RS08110 (MKS87_08110) ylbF 1545992..1546441 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  MKS87_RS08115 (MKS87_08115) ylbG 1546496..1546768 (+) 273 WP_015715839.1 YlbG family protein -
  MKS87_RS08120 (MKS87_08120) rsmD 1547091..1547645 (+) 555 WP_160221559.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MKS87_RS08125 (MKS87_08125) coaD 1547650..1548135 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  MKS87_RS08130 (MKS87_08130) spoVV 1548146..1549372 (-) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  MKS87_RS08135 (MKS87_08135) ylbK 1549553..1550335 (+) 783 WP_003232221.1 patatin family protein -
  MKS87_RS08140 (MKS87_08140) sepM 1550337..1551362 (+) 1026 WP_173614066.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=567341 MKS87_RS08110 WP_003221370.1 1545992..1546441(+) (ylbF) [Bacillus subtilis strain YB-15]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=567341 MKS87_RS08110 WP_003221370.1 1545992..1546441(+) (ylbF) [Bacillus subtilis strain YB-15]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGTTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1