Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   MKS87_RS06745 Genome accession   NZ_CP092631
Coordinates   1295164..1296300 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290164..1301300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS06725 (MKS87_06725) uxaA 1290614..1292107 (+) 1494 WP_173614031.1 altronate dehydratase family protein -
  MKS87_RS06730 (MKS87_06730) yjnA 1292146..1292910 (-) 765 WP_033884348.1 sulfite exporter TauE/SafE family protein -
  MKS87_RS06735 (MKS87_06735) yjoA 1293135..1293599 (-) 465 WP_014479541.1 DinB family protein -
  MKS87_RS06740 (MKS87_06740) yjoB 1293748..1295019 (+) 1272 WP_088325665.1 ATPase YjoB -
  MKS87_RS06745 (MKS87_06745) rapC 1295164..1296300 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  MKS87_RS06750 (MKS87_06750) phrA 1296290..1296424 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  MKS87_RS06755 (MKS87_06755) yjpA 1296454..1296711 (-) 258 WP_024572656.1 YciI family protein -
  MKS87_RS06760 (MKS87_06760) xlyB 1296832..1297785 (+) 954 WP_173614032.1 N-acetylmuramoyl-L-alanine amidase -
  MKS87_RS06765 (MKS87_06765) yjqA 1297825..1298202 (-) 378 WP_173614407.1 PH domain-containing protein -
  MKS87_RS06770 (MKS87_06770) pghB 1298308..1298910 (+) 603 WP_041344770.1 poly-gamma-glutamate hydrolase family protein -
  MKS87_RS06775 (MKS87_06775) xpdC 1298987..1299823 (+) 837 WP_173614033.1 manganese catalase family protein -
  MKS87_RS06780 (MKS87_06780) xkdA 1299867..1300463 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  MKS87_RS06785 (MKS87_06785) xre 1300626..1300967 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=567331 MKS87_RS06745 WP_015252291.1 1295164..1296300(+) (rapC) [Bacillus subtilis strain YB-15]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=567331 MKS87_RS06745 WP_015252291.1 1295164..1296300(+) (rapC) [Bacillus subtilis strain YB-15]
TTGAGGATGAAGCAGACGATTCCGTCCTCATATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTGGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAACTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTACTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418