Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MKS87_RS06260 Genome accession   NZ_CP092631
Coordinates   1209111..1210940 (+) Length   609 a.a.
NCBI ID   WP_167408054.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1204111..1215940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS06225 (MKS87_06225) yjbC 1204780..1205358 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  MKS87_RS06230 (MKS87_06230) spx 1205539..1205934 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  MKS87_RS06235 (MKS87_06235) yjbE 1205980..1206636 (-) 657 WP_003232944.1 TerC family protein -
  MKS87_RS06240 (MKS87_06240) - 1206806..1206946 (+) 141 WP_119122854.1 hypothetical protein -
  MKS87_RS06245 (MKS87_06245) mecA 1206913..1207569 (+) 657 WP_003232942.1 adaptor protein MecA Regulator
  MKS87_RS06250 (MKS87_06250) - 1207564..1207686 (-) 123 WP_021479547.1 hypothetical protein -
  MKS87_RS06255 (MKS87_06255) coiA 1207730..1208881 (+) 1152 WP_197196205.1 competence protein CoiA Machinery gene
  MKS87_RS06260 (MKS87_06260) pepF 1209111..1210940 (+) 1830 WP_167408054.1 oligoendopeptidase F Regulator
  MKS87_RS06265 (MKS87_06265) - 1210978..1211145 (-) 168 WP_003244944.1 hypothetical protein -
  MKS87_RS06270 (MKS87_06270) spxH 1211460..1212359 (-) 900 WP_024573348.1 protease adaptor protein SpxH -
  MKS87_RS06275 (MKS87_06275) yjbI 1212356..1212754 (-) 399 WP_046380935.1 thiol management oxidoreductase -
  MKS87_RS06280 (MKS87_06280) cwlQ 1213009..1213743 (-) 735 WP_275892432.1 bifunctional muramidase/murein lytic transglycosylase -
  MKS87_RS06285 (MKS87_06285) yjbK 1213758..1214330 (-) 573 WP_003232924.1 CYTH domain-containing protein -
  MKS87_RS06290 (MKS87_06290) - 1214455..1214823 (+) 369 WP_003232922.1 hypothetical protein -
  MKS87_RS06295 (MKS87_06295) yjbM 1214852..1215487 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 609 a.a.        Molecular weight: 70099.97 Da        Isoelectric Point: 5.1580

>NTDB_id=567330 MKS87_RS06260 WP_167408054.1 1209111..1210940(+) (pepF) [Bacillus subtilis strain YB-15]
MAEEKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQDKVMERLGRLY
TYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEITKERPHVLSEK
EEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTYGQYKNTMATT
LSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDLYTPLVKDAGM
KVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNLFTLVHEFGHS
VHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAEFEHLIHTKAQ
EGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGKPAVDRYIEFL
KAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1830 bp        

>NTDB_id=567330 MKS87_RS06260 WP_167408054.1 1209111..1210940(+) (pepF) [Bacillus subtilis strain YB-15]
ATGGCTGAGGAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAAGGCAGAAGACACATGGAGACTTGAGGATAT
TTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAATTAATTCCGAATTTATCTAAGTATAAAGGAA
AGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGATAAAGTGATGGAGCGGCTGGGTAGGCTGTAC
ACATATGCGCATATGCGCTCTGACCAGGATACTGGGAACTCCTTTTACCAGGGGCTGAATGACAAGGCGGGAAACCTGTA
TACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCATAGAAGAAGACAAACTGCAGCAGTTCATTC
TTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACAAAGGAACGTCCGCATGTGCTGAGCGAGAAG
GAAGAGGCACTGCTTGCTGAAGCCTCCGAGGTACTGGGGTCATCTTCAAATACATTCAGCGTGTTAAATAACGCAGATAT
AACGTTTCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTCACGGCAACTTTATTAATTTCTTGGAAAGTG
AAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTACGGACAATATAAAAACACAATGGCCACGACG
CTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTACAAGTCCGCGCGTGAGGCTGCGCTTTCTAA
CAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATAAGCATTTGCCGCTCCTGCACCGCTATATTG
CGCTAAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTGTATACACCGCTTGTGAAAGATGCTGGGATG
AAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTTGCACCTTTAGGGGAAGAATATGCCTCTATCCTAAA
AGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAGAATAAAGGCAAACGCAATGGGGCTTATTCATCAGGAGCTTACG
GCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTCTTTACGCTCGTGCACGAGTTTGGACATTCC
GTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTACAGTATCTTTGTCGCGGAAGTTGCCTCTAC
GACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATGAAAAACAGCGCTTATATATTCTCAACCATA
TGCTTGAGGGCTTCAGGGGAACGGTCTTCAGACAAACGATGTTCGCTGAATTTGAACATCTGATTCATACAAAGGCGCAA
GAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCTGAATAAAAAGTATTTTGGAGACGGCATGGT
GATTGATAAGGAAATCGGTCTTGAATGGTCGCGTATTCCGCACTTCTATTACAATTACTATGTGTATCAGTATGCGACAG
GGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAGCCGGCGGTTGACCGTTATATTGAATTCCTG
AAAGCAGGAAGCTCACAATACCCGATTGATGTCTTGAAAAAAGCGGGTGTTGATATGACGTCCCCAGAGCCAATCGAAGC
CGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGATGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Peptidase family M3 (Peptidase_M3)

(211-590)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

97.537

0.476