Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcE   Type   Machinery gene
Locus tag   MKS87_RS05410 Genome accession   NZ_CP092631
Coordinates   1043917..1046808 (+) Length   963 a.a.
NCBI ID   WP_197196232.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1038917..1051808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS05385 (MKS87_05385) yhaR 1039331..1040098 (+) 768 WP_003245167.1 enoyl-CoA hydratase -
  MKS87_RS05390 (MKS87_05390) yhzD 1040119..1040304 (-) 186 WP_003233264.1 YhzD family protein -
  MKS87_RS05395 (MKS87_05395) yhaQ 1040431..1041327 (+) 897 WP_003233262.1 ABC transporter ATP-binding protein -
  MKS87_RS05400 (MKS87_05400) yhaP 1041320..1042579 (+) 1260 WP_003244912.1 ABC transporter permease -
  MKS87_RS05405 (MKS87_05405) yhaO 1042686..1043912 (+) 1227 WP_038428705.1 exonuclease SbcCD subunit D -
  MKS87_RS05410 (MKS87_05410) sbcE 1043917..1046808 (+) 2892 WP_197196232.1 DNA repair/recombination ATPase SbcE Machinery gene
  MKS87_RS05415 (MKS87_05415) yhaM 1046882..1047826 (+) 945 WP_003245698.1 3'-5' exoribonuclease YhaM -
  MKS87_RS05420 (MKS87_05420) yhaL 1047951..1048163 (+) 213 WP_003233252.1 sporulation protein YhaL -
  MKS87_RS05425 (MKS87_05425) prsA 1048203..1049081 (-) 879 WP_003245079.1 peptidylprolyl isomerase PrsA -
  MKS87_RS05430 (MKS87_05430) yhzE1 1049241..1049327 (+) 87 WP_003327753.1 sporulation protein YhzE1 -
  MKS87_RS05435 (MKS87_05435) yhzE2 1049452..1049538 (+) 87 WP_003155248.1 sporulation protein YhzE2 -
  MKS87_RS05440 (MKS87_05440) - 1049591..1049773 (-) 183 WP_024571667.1 hypothetical protein -
  MKS87_RS05445 (MKS87_05445) yhaJ 1049881..1050399 (-) 519 WP_003245590.1 DUF3267 domain-containing protein -
  MKS87_RS05450 (MKS87_05450) yhaI 1050607..1050948 (+) 342 WP_009966921.1 YhaI family protein -
  MKS87_RS05455 (MKS87_05455) scoC 1050945..1051556 (-) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -

Sequence

Protein


Download         Length: 963 a.a.        Molecular weight: 111268.34 Da        Isoelectric Point: 6.3095

>NTDB_id=567312 MKS87_RS05410 WP_197196232.1 1043917..1046808(+) (sbcE) [Bacillus subtilis strain YB-15]
MTALRIISLHIYQYGKFSNRTFHFSASPVQVIYGLNEAGKTTMMSFIESMLFGFPKTKKYEPKTGGVYGGVLEAEHPEYG
VLKIERTKGTAEKLSVYTEKGEVKQGDVLKQLFQGTDRSLYKAIYSFDVFGLQEIHAFNRDKIGEFLLFSSLFGAEAVSK
LDSRLTKESERLYKPNGRNPQLNQELETLKQLAVKLKQAEAEEAGYHQLLEEKRTLEARLAAAETELKETAGHIRMIEGA
IERKPLLNEKATLEQVIAEFPEHAGQFPADGLHQLEKYESHLHPKSAQLEALRVKMAELDKQRQKLIPDKELLAKETLIQ
ELSAAFHMYQSWGEQLAAIQAQLRQTSAQTAAGLEQLNKTDENELLNMNTSYDYEWQLQQAVQQYVQARDRKRQLDETFE
LARQELEDAEKAVRAASSAILENSQRKDKEAALRAYDETQGQHQEQAKLREQLTFFERQQAKQKKTVIAAGMLFIVLFSL
LQQWIPAISFGAALIVYWLVSGKSSSRNSRETRQPMTDISPAEAEMLREALWEDDRNKQHLLTQRAALQQKEAAYERVIQ
QFEQWEAEMAPSFTQVERFMKELGFKEDPSFLLDAYSLMKDVKKEVKKKHELTIEAGRLKKHRRTFEERVSMLRPVNQSQ
DISISDALHTLRKNIEREKEIEKQKKEIETDIHYTKELMLELEQEIQYFHAQIEQLFAAAAAKDRDAFFAIADISRQLKD
TENKLHHVNAQLQGEHPEELELADSNTLSELKDKQFVENERKERLTEEIEQLRSQIALLSVKQEQLEASGMVSDLKLQTE
MQKERVKETAKKWASIQMVKQVIRNKLERHKKIELPRLLETAGEFFRPLTDGNYQTIYFSETDDSIMVMHRDGTVYHAEE
LSQGTCEQLYTAIRFALAVTRQGGSKLPFQLDDSFVHFDQERLKRVLHVLYDLSEGGRQILYFTCHEHVKDAFHNSQIIH
LVS

Nucleotide


Download         Length: 2892 bp        

>NTDB_id=567312 MKS87_RS05410 WP_197196232.1 1043917..1046808(+) (sbcE) [Bacillus subtilis strain YB-15]
GTGACAGCTTTGCGAATTATATCTTTACATATCTACCAATATGGGAAATTTTCCAATCGGACCTTTCACTTTTCCGCCTC
TCCTGTCCAAGTAATTTACGGATTAAATGAGGCAGGAAAAACGACGATGATGTCATTTATTGAAAGTATGCTGTTCGGTT
TTCCAAAAACAAAAAAATATGAACCGAAAACAGGCGGTGTCTACGGCGGTGTTCTTGAAGCTGAACATCCTGAATATGGG
GTGCTGAAGATCGAACGGACGAAAGGGACTGCCGAAAAACTAAGCGTGTACACAGAAAAGGGCGAAGTAAAGCAGGGAGA
TGTTTTAAAGCAGCTGTTCCAGGGCACAGACAGGTCGTTGTACAAAGCCATATATTCGTTTGACGTATTCGGGCTGCAGG
AAATTCACGCCTTTAATCGGGATAAGATAGGGGAATTTTTGCTCTTTTCCAGCTTGTTTGGTGCTGAAGCCGTATCAAAG
CTTGATTCAAGGCTGACGAAGGAAAGCGAAAGGCTCTATAAACCAAATGGGCGAAACCCTCAATTGAATCAGGAGCTGGA
AACGCTTAAGCAGCTGGCAGTTAAGCTAAAACAGGCTGAAGCAGAGGAAGCGGGCTATCATCAGCTTCTCGAGGAAAAAC
GAACGCTTGAAGCCCGCCTTGCAGCCGCGGAAACCGAATTGAAAGAGACGGCGGGACATATCCGAATGATTGAGGGAGCG
ATTGAGCGAAAGCCGCTGCTAAATGAAAAAGCGACACTCGAACAGGTGATTGCAGAATTTCCGGAACACGCAGGACAATT
TCCTGCTGACGGACTGCATCAGCTGGAAAAATATGAATCCCATCTTCACCCGAAATCAGCACAGCTTGAGGCGCTTCGGG
TGAAGATGGCGGAGTTGGACAAACAGAGGCAAAAGCTTATCCCCGATAAAGAACTATTGGCGAAAGAAACGCTGATACAA
GAGCTTTCGGCAGCGTTTCATATGTACCAATCCTGGGGAGAACAGCTGGCAGCCATTCAGGCACAGCTGCGCCAGACGTC
TGCGCAGACAGCGGCAGGGCTGGAACAGCTCAATAAAACGGATGAAAATGAGCTCCTGAATATGAACACCTCATATGATT
ATGAATGGCAGCTTCAGCAAGCGGTGCAGCAATATGTACAGGCAAGAGACAGAAAACGGCAGCTTGACGAGACGTTTGAA
CTTGCCCGGCAAGAGCTGGAAGACGCGGAAAAGGCCGTTCGTGCCGCTTCGTCCGCGATTCTTGAAAACAGCCAAAGAAA
AGATAAAGAAGCAGCTCTTAGAGCATATGATGAAACACAGGGGCAGCACCAAGAGCAAGCGAAGCTCAGAGAACAGCTAA
CGTTTTTTGAAAGACAGCAGGCTAAACAGAAAAAGACTGTCATTGCAGCTGGTATGTTGTTCATCGTTCTCTTTTCTCTG
CTGCAGCAATGGATTCCCGCCATAAGTTTCGGCGCTGCACTTATTGTGTATTGGCTTGTTTCAGGAAAGTCGTCTTCTCG
AAACAGCCGAGAGACAAGACAGCCCATGACGGATATTTCACCAGCAGAAGCTGAAATGCTTAGAGAAGCGTTATGGGAGG
ATGACCGCAATAAGCAGCACCTTCTCACACAGCGTGCAGCGCTCCAGCAAAAAGAGGCGGCGTATGAAAGGGTCATCCAG
CAGTTTGAACAGTGGGAAGCCGAAATGGCGCCGTCCTTTACACAGGTTGAGCGTTTTATGAAAGAGCTCGGATTTAAGGA
AGATCCATCATTTTTGCTTGATGCATACAGCTTAATGAAGGATGTTAAAAAAGAAGTGAAGAAAAAGCATGAGCTGACCA
TTGAAGCAGGCAGGCTGAAAAAGCACCGGAGAACATTCGAAGAACGCGTCAGTATGCTTCGTCCCGTGAATCAGAGTCAG
GATATCTCCATTTCGGACGCCCTTCACACATTGCGGAAAAACATTGAACGTGAAAAAGAAATTGAGAAGCAAAAAAAGGA
AATTGAAACAGATATTCATTATACAAAGGAACTGATGCTTGAACTTGAGCAAGAAATACAGTATTTCCACGCACAGATTG
AACAGTTATTTGCCGCGGCTGCTGCAAAAGACAGAGATGCGTTTTTTGCCATAGCCGACATCAGCAGGCAATTGAAGGAT
ACGGAGAACAAGCTTCATCACGTAAACGCACAGCTTCAAGGCGAGCACCCGGAGGAACTTGAACTGGCGGATTCCAATAC
GCTTTCTGAATTGAAAGATAAGCAATTTGTTGAGAATGAAAGAAAAGAGCGGCTGACTGAGGAGATCGAGCAGCTCCGCA
GCCAAATCGCACTGCTCTCAGTCAAACAGGAACAATTAGAGGCTTCGGGAATGGTCTCAGACCTCAAGCTTCAAACCGAA
ATGCAAAAAGAACGTGTGAAAGAAACGGCTAAAAAATGGGCCTCCATACAAATGGTCAAACAGGTGATCAGAAACAAATT
GGAGCGGCATAAAAAAATCGAGCTTCCGCGCCTTCTGGAGACGGCAGGAGAATTTTTCCGCCCTCTGACTGACGGAAACT
ACCAAACCATTTATTTTTCCGAAACGGACGATTCGATCATGGTTATGCATCGCGATGGAACTGTCTATCATGCGGAAGAG
CTGTCACAAGGGACATGTGAACAGCTGTATACAGCGATCCGATTTGCTTTGGCCGTTACGCGCCAGGGTGGGTCAAAGCT
TCCGTTCCAGCTTGACGACAGTTTTGTTCATTTTGATCAGGAAAGGCTGAAACGTGTATTACATGTTCTGTATGATTTAT
CTGAAGGCGGTAGGCAGATTTTGTATTTTACATGCCATGAGCACGTAAAAGATGCATTTCATAACAGCCAAATCATCCAT
TTGGTGTCATAA

Domains

Predicted by InterProScan.

AAA domain (AAA_27)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcE Bacillus subtilis subsp. subtilis str. 168

99.065

100

0.991