Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   MKS87_RS02475 Genome accession   NZ_CP092631
Coordinates   477879..478313 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain YB-15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 472879..483313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS02445 (MKS87_02445) ydaD 473527..474387 (+) 861 WP_015252798.1 SDR family oxidoreductase -
  MKS87_RS02450 (MKS87_02450) lyxE 474403..474906 (+) 504 WP_173613916.1 D-lyxose ketol-isomerase -
  MKS87_RS02455 (MKS87_02455) ydaF 474993..475544 (+) 552 WP_029317311.1 GNAT family protein -
  MKS87_RS02460 (MKS87_02460) ydaG 475622..476044 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  MKS87_RS02465 (MKS87_02465) amj 476550..477359 (+) 810 WP_014478868.1 lipid II flippase Amj -
  MKS87_RS02470 (MKS87_02470) ydzA 477404..477694 (-) 291 WP_014478869.1 DUF3817 domain-containing protein -
  MKS87_RS02475 (MKS87_02475) lrpC 477879..478313 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  MKS87_RS02480 (MKS87_02480) topB 478378..480561 (+) 2184 WP_240304237.1 DNA topoisomerase III -
  MKS87_RS02485 (MKS87_02485) - 480764..481852 (+) 1089 WP_173613918.1 glycosyl hydrolase family 8 -
  MKS87_RS02490 (MKS87_02490) epsK 481833..482684 (+) 852 WP_131227128.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=567302 MKS87_RS02475 WP_003246585.1 477879..478313(+) (lrpC) [Bacillus subtilis strain YB-15]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=567302 MKS87_RS02475 WP_003246585.1 477879..478313(+) (lrpC) [Bacillus subtilis strain YB-15]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGGCAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1