Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MKF35_RS26950 Genome accession   NZ_CP092629
Coordinates   5821170..5821499 (-) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain HU20     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5816170..5826499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF35_RS26935 uvrB 5817557..5819569 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  MKF35_RS26940 - 5819757..5820953 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  MKF35_RS26950 comEA/comE1 5821170..5821499 (-) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  MKF35_RS26955 - 5821690..5823687 (-) 1998 WP_009313767.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MKF35_RS26960 - 5823818..5824843 (-) 1026 WP_004350972.1 glycosyltransferase family 4 protein -
  MKF35_RS26965 - 5824840..5825799 (-) 960 WP_004350973.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=567277 MKF35_RS26950 WP_003104586.1 5821170..5821499(-) (comEA/comE1) [Pseudomonas aeruginosa strain HU20]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=567277 MKF35_RS26950 WP_003104586.1 5821170..5821499(-) (comEA/comE1) [Pseudomonas aeruginosa strain HU20]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385