Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   MKF35_RS09680 Genome accession   NZ_CP092629
Coordinates   2078053..2078577 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain HU20     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2073053..2083577
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF35_RS09660 - 2073120..2075591 (-) 2472 WP_017148635.1 penicillin-binding protein 1A -
  MKF35_RS09665 pilM 2075776..2076840 (+) 1065 WP_047105348.1 type IV pilus assembly protein PilM Machinery gene
  MKF35_RS09670 pilN 2076840..2077436 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  MKF35_RS09675 pilO 2077433..2078056 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  MKF35_RS09680 comL/pilP 2078053..2078577 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  MKF35_RS09685 pilQ 2078631..2080775 (+) 2145 WP_003146401.1 type 4a pilus secretin PilQ Machinery gene
  MKF35_RS09690 aroK 2080787..2081305 (+) 519 WP_003095833.1 shikimate kinase AroK -
  MKF35_RS09695 aroB 2081355..2082461 (+) 1107 WP_003107839.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=567222 MKF35_RS09680 WP_003095836.1 2078053..2078577(+) (comL/pilP) [Pseudomonas aeruginosa strain HU20]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=567222 MKF35_RS09680 WP_003095836.1 2078053..2078577(+) (comL/pilP) [Pseudomonas aeruginosa strain HU20]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362