Detailed information    

insolico Bioinformatically predicted

Overview


Name   cinA   Type   Machinery gene
Locus tag   SAFDA_RS06160 Genome accession   NZ_AP014942
Coordinates   1256232..1257383 (+) Length   383 a.a.
NCBI ID   WP_000020346.1    Uniprot ID   -
Organism   Staphylococcus aureus strain FDA209P     
Function   unknown (predicted from homology)   
Unclear

Genomic Context


Location: 1251232..1262383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAFDA_RS06135 (SAFDA_1149) yfmH 1252061..1253347 (+) 1287 WP_000664778.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  SAFDA_RS06140 (SAFDA_1150) ymfI 1253347..1254051 (+) 705 WP_000646227.1 elongation factor P 5-aminopentanone reductase -
  SAFDA_RS06145 (SAFDA_1151) - 1254156..1254983 (+) 828 WP_000214890.1 YmfK family protein -
  SAFDA_RS06150 (SAFDA_1152) - 1255002..1255394 (+) 393 WP_000859443.1 helix-turn-helix domain-containing protein -
  SAFDA_RS06155 (SAFDA_1153) pgsA 1255428..1256006 (+) 579 WP_001025092.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  SAFDA_RS06160 (SAFDA_1154) cinA 1256232..1257383 (+) 1152 WP_000020346.1 CinA family nicotinamide mononucleotide deamidase-related protein Machinery gene
  SAFDA_RS06165 (SAFDA_1155) recA 1257548..1258591 (+) 1044 WP_000368166.1 recombinase RecA -
  SAFDA_RS06170 (SAFDA_1156) rny 1258945..1260504 (+) 1560 WP_001050913.1 ribonuclease Y -
  SAFDA_RS06175 (SAFDA_1157) - 1260801..1261016 (-) 216 WP_000026308.1 hypothetical protein -
  SAFDA_RS06180 (SAFDA_1158) - 1261190..1261987 (+) 798 WP_001222105.1 TIGR00282 family metallophosphoesterase -

Sequence


Protein


Download         Length: 383 a.a.        Molecular weight: 43237.52 Da        Isoelectric Point: 6.1914

>NTDB_id=56713 SAFDA_RS06160 WP_000020346.1 1256232..1257383(+) (cinA) [Staphylococcus aureus strain FDA209P]
MSIAIIAVGSELLLGQIANTNGQFLSKVFNEIGQNVLEHKVIGDNKKRLESSVRHALEKYDTVILTGGLGPTKDDLTKHT
VAQIVGKDLVIDEPSLKYIESYFEEQGQEMTPNNKQQALVIEGSTVLANHHGMAPGMMVNFENKQIILLPGPPKEMQPMV
KNELLSHFINHNRIIHSELLRFAGIGESKVETILIDLIDKQTNPTIAPLAGSHEVYIRLTANADSKEQAQSLIQPVKQEI
LDRIGEYYYGSDDTLIEQAVIKKIHEPFVIYDGITNGALYHRLKEVDLNDVLKGMINHNENFVDINKPIEQQLKDAVQFV
NKLFNVSSAIILLEYDGVVHIGYDNNFEFKTEQFKMSKSRNLLKNRSQNYALIRLLNWLRTTN

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=56713 SAFDA_RS06160 WP_000020346.1 1256232..1257383(+) (cinA) [Staphylococcus aureus strain FDA209P]
ATGTCAATTGCCATTATTGCTGTAGGCTCAGAACTATTGCTAGGTCAAATCGCTAATACCAACGGACAATTTCTATCTAA
AGTATTTAATGAAATTGGACAAAATGTATTAGAACATAAAGTTATTGGAGATAATAAAAAACGTTTAGAATCAAGTGTAC
GTCATGCGCTAGAAAAATATGATACTGTTATTTTAACAGGTGGCTTAGGTCCTACGAAAGATGACTTAACGAAGCATACA
GTGGCCCAGATTGTTGGTAAAGATTTAGTTATTGATGAGCCTTCTTTAAAATATATTGAAAGCTATTTTGAGGAACAAGG
ACAAGAAATGACACCTAATAATAAACAACAGGCTTTAGTAATTGAAGGTTCAACTGTATTGGCAAATCATCATGGCATGG
CTCCAGGAATGATGGTGAATTTTGAAAACAAACAAATTATTTTATTACCAGGTCCACCGAAAGAAATGCAACCAATGGTG
AAAAATGAATTGTTGTCACATTTTATAAACCATAATCGAATTATACATTCTGAACTATTAAGATTTGCGGGAATAGGTGA
ATCTAAAGTAGAAACAATATTAATAGATCTTATCGATAAACAGACTAATCCTACGATTGCGCCTTTGGCGGGAAGTCATG
AAGTATATATTAGATTGACTGCAAATGCCGACTCAAAAGAACAAGCACAATCATTGATTCAACCTGTTAAACAAGAAATT
CTTGATCGTATTGGAGAATATTATTATGGTTCAGATGACACATTAATTGAGCAAGCTGTAATAAAGAAAATTCATGAACC
TTTTGTAATATATGATGGTATTACTAATGGTGCTTTATATCATCGATTGAAAGAAGTGGATTTAAACGATGTTCTAAAGG
GTATGATTAATCACAATGAAAACTTTGTTGATATTAATAAACCTATTGAGCAGCAATTAAAAGATGCAGTGCAATTTGTT
AATAAATTGTTTAATGTGTCATCAGCAATTATTCTATTAGAGTATGATGGTGTAGTCCATATAGGCTATGATAATAACTT
TGAATTTAAAACTGAGCAATTTAAAATGTCTAAATCTAGAAATTTATTAAAGAACAGAAGTCAAAATTATGCGCTCATAA
GATTATTAAATTGGCTTAGAACAACAAATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

40.389

100

0.433


Multiple sequence alignment