Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIL96_RS19240 Genome accession   NZ_CP074961
Coordinates   3699921..3700550 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 01_3327     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3694921..3705550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIL96_RS19225 (KIL96_18985) helD 3695163..3697217 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIL96_RS19230 (KIL96_18990) yccF 3697340..3697786 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIL96_RS19235 (KIL96_18995) yccS 3697796..3699958 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIL96_RS19240 (KIL96_19000) sxy/tfoX 3699921..3700550 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIL96_RS19245 (KIL96_19005) sulA 3700769..3701278 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIL96_RS19250 (KIL96_19010) ompA 3701635..3702675 (+) 1041 WP_000750416.1 porin OmpA -
  KIL96_RS19255 (KIL96_19015) matP 3702750..3703202 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIL96_RS19260 (KIL96_19020) ycbZ 3703388..3705148 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=567108 KIL96_RS19240 WP_000839153.1 3699921..3700550(-) (sxy/tfoX) [Escherichia coli strain 01_3327]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=567108 KIL96_RS19240 WP_000839153.1 3699921..3700550(-) (sxy/tfoX) [Escherichia coli strain 01_3327]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1