Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | KIM00_RS19235 | Genome accession | NZ_CP074946 |
| Coordinates | 3644788..3645417 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain 05_3471 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3619593..3657920 | 3644788..3645417 | within | 0 |
Gene organization within MGE regions
Location: 3619593..3657920
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KIM00_RS19030 (KIM00_18770) | - | 3619814..3620086 (-) | 273 | WP_001342259.1 | hypothetical protein | - |
| KIM00_RS19035 | - | 3620055..3620186 (-) | 132 | WP_001342258.1 | hypothetical protein | - |
| KIM00_RS19040 (KIM00_18775) | - | 3620222..3620479 (+) | 258 | WP_001260977.1 | type II toxin-antitoxin system ParD family antitoxin | - |
| KIM00_RS19045 (KIM00_18780) | - | 3620485..3620784 (+) | 300 | WP_000220601.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
| KIM00_RS19050 (KIM00_18785) | - | 3620989..3621333 (-) | 345 | WP_000206830.1 | hypothetical protein | - |
| KIM00_RS19055 (KIM00_18790) | - | 3621330..3621695 (-) | 366 | WP_001229296.1 | HNH endonuclease | - |
| KIM00_RS19060 (KIM00_18795) | - | 3621697..3621915 (-) | 219 | WP_000209152.1 | DUF4014 family protein | - |
| KIM00_RS19065 (KIM00_18800) | - | 3622126..3622638 (-) | 513 | Protein_3739 | ead/Ea22-like family protein | - |
| KIM00_RS19070 (KIM00_18805) | - | 3622635..3622811 (-) | 177 | WP_000753069.1 | hypothetical protein | - |
| KIM00_RS19075 (KIM00_18810) | - | 3622804..3622986 (-) | 183 | WP_001224662.1 | DUF7167 family protein | - |
| KIM00_RS19080 (KIM00_18815) | - | 3623020..3623232 (-) | 213 | WP_000935422.1 | hypothetical protein | - |
| KIM00_RS19085 (KIM00_18820) | - | 3623283..3623639 (-) | 357 | WP_000403783.1 | hypothetical protein | - |
| KIM00_RS19090 (KIM00_18825) | - | 3623617..3624078 (-) | 462 | WP_001209480.1 | sigma-E factor regulatory protein RseB domain-containing protein | - |
| KIM00_RS19095 (KIM00_18830) | - | 3624075..3624371 (-) | 297 | WP_001266133.1 | DUF4406 domain-containing protein | - |
| KIM00_RS19100 (KIM00_18835) | - | 3624368..3624760 (-) | 393 | WP_001040234.1 | DUF977 family protein | - |
| KIM00_RS19105 (KIM00_18840) | - | 3624776..3625501 (-) | 726 | WP_000450641.1 | DUF1627 domain-containing protein | - |
| KIM00_RS19110 (KIM00_18845) | - | 3625535..3625996 (-) | 462 | WP_000139444.1 | replication protein P | - |
| KIM00_RS19115 (KIM00_18850) | - | 3625989..3626999 (-) | 1011 | WP_000729535.1 | DUF1376 domain-containing protein | - |
| KIM00_RS19120 (KIM00_18855) | - | 3627086..3627523 (-) | 438 | WP_000693932.1 | toxin YdaT family protein | - |
| KIM00_RS19125 (KIM00_18860) | - | 3627520..3627780 (-) | 261 | WP_001172789.1 | transcriptional regulator | - |
| KIM00_RS19130 (KIM00_18865) | - | 3627907..3628299 (+) | 393 | WP_000578360.1 | helix-turn-helix domain-containing protein | - |
| KIM00_RS19135 (KIM00_18870) | - | 3628346..3628705 (-) | 360 | WP_001022415.1 | helix-turn-helix domain-containing protein | - |
| KIM00_RS19140 (KIM00_18875) | - | 3628708..3629010 (-) | 303 | WP_000692026.1 | type II toxin-antitoxin system HigB family toxin | - |
| KIM00_RS19145 | - | 3629424..3629624 (-) | 201 | WP_024182289.1 | ECs_2282 family putative zinc-binding protein | - |
| KIM00_RS19150 (KIM00_18885) | ydfC | 3629717..3629935 (+) | 219 | WP_001171921.1 | protein YdfC | - |
| KIM00_RS19155 (KIM00_18890) | dicB | 3630504..3630692 (+) | 189 | WP_000449175.1 | cell division inhibition protein DicB | - |
| KIM00_RS19160 (KIM00_18895) | - | 3630689..3630877 (+) | 189 | WP_000199475.1 | DUF1482 family protein | - |
| KIM00_RS19165 (KIM00_18900) | - | 3630972..3633422 (+) | 2451 | WP_000048499.1 | exonuclease | - |
| KIM00_RS19170 (KIM00_18905) | - | 3633490..3633732 (+) | 243 | WP_000273151.1 | DUF4224 domain-containing protein | - |
| KIM00_RS19175 (KIM00_18910) | - | 3633710..3634729 (+) | 1020 | WP_001299351.1 | tyrosine-type recombinase/integrase | - |
| KIM00_RS19180 (KIM00_18915) | yccA | 3635137..3635796 (+) | 660 | WP_000375138.1 | FtsH protease modulator YccA | - |
| KIM00_RS19185 (KIM00_18920) | tusE | 3635887..3636216 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| KIM00_RS19190 (KIM00_18925) | yccX | 3636213..3636491 (-) | 279 | WP_000048244.1 | acylphosphatase | - |
| KIM00_RS19195 (KIM00_18930) | rlmI | 3636586..3637776 (+) | 1191 | WP_000116301.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| KIM00_RS19200 (KIM00_18935) | hspQ | 3637834..3638151 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| KIM00_RS19205 (KIM00_18940) | yccU | 3638196..3638609 (-) | 414 | WP_000665217.1 | CoA-binding protein | - |
| KIM00_RS19210 (KIM00_18945) | csgI | 3638782..3639444 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| KIM00_RS19215 (KIM00_18950) | mgsA | 3639540..3639998 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| KIM00_RS19220 (KIM00_18955) | helD | 3640030..3642084 (-) | 2055 | WP_001297106.1 | DNA helicase IV | - |
| KIM00_RS19225 (KIM00_18960) | yccF | 3642207..3642653 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| KIM00_RS19230 (KIM00_18965) | yccS | 3642663..3644825 (+) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| KIM00_RS19235 (KIM00_18970) | sxy/tfoX | 3644788..3645417 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| KIM00_RS19240 (KIM00_18975) | sulA | 3645636..3646145 (+) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| KIM00_RS19245 (KIM00_18980) | ompA | 3646502..3647542 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| KIM00_RS19250 (KIM00_18985) | matP | 3647617..3648069 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| KIM00_RS19255 (KIM00_18990) | ycbZ | 3648255..3650015 (+) | 1761 | WP_000156528.1 | AAA family ATPase | - |
| KIM00_RS19260 (KIM00_18995) | fabA | 3650084..3650602 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| KIM00_RS19265 (KIM00_19000) | rmf | 3650672..3650839 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| KIM00_RS19270 (KIM00_19005) | pqiC | 3651095..3651658 (-) | 564 | WP_000759122.1 | membrane integrity-associated transporter subunit PqiC | - |
| KIM00_RS19275 (KIM00_19010) | pqiB | 3651655..3653295 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| KIM00_RS19280 (KIM00_19015) | pqiA | 3653300..3654553 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| KIM00_RS19285 (KIM00_19020) | uup | 3654683..3656590 (-) | 1908 | WP_000053122.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=567020 KIM00_RS19235 WP_000839153.1 3644788..3645417(-) (sxy/tfoX) [Escherichia coli strain 05_3471]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=567020 KIM00_RS19235 WP_000839153.1 3644788..3645417(-) (sxy/tfoX) [Escherichia coli strain 05_3471]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |