Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM12_RS20950 Genome accession   NZ_CP074900
Coordinates   3917547..3918176 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 10_253     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3906469..3929349 3917547..3918176 within 0


Gene organization within MGE regions


Location: 3906469..3929349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM12_RS20890 (KIM12_20610) - 3906469..3907488 (+) 1020 WP_001299351.1 tyrosine-type recombinase/integrase -
  KIM12_RS20895 (KIM12_20615) yccA 3907896..3908555 (+) 660 WP_000375138.1 FtsH protease modulator YccA -
  KIM12_RS20900 (KIM12_20620) tusE 3908646..3908975 (+) 330 WP_000904442.1 sulfurtransferase TusE -
  KIM12_RS20905 (KIM12_20625) yccX 3908972..3909250 (-) 279 WP_000048244.1 acylphosphatase -
  KIM12_RS20910 (KIM12_20630) rlmI 3909345..3910535 (+) 1191 WP_000116301.1 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI -
  KIM12_RS20915 (KIM12_20635) hspQ 3910593..3910910 (+) 318 WP_001295356.1 heat shock protein HspQ -
  KIM12_RS20920 (KIM12_20640) yccU 3910955..3911368 (-) 414 WP_000665217.1 CoA-binding protein -
  KIM12_RS20925 (KIM12_20645) csgI 3911541..3912203 (+) 663 WP_000847791.1 DUF2057 family protein -
  KIM12_RS20930 (KIM12_20650) mgsA 3912299..3912757 (+) 459 WP_000424181.1 methylglyoxal synthase -
  KIM12_RS20935 (KIM12_20655) helD 3912789..3914843 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM12_RS20940 (KIM12_20660) yccF 3914966..3915412 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM12_RS20945 (KIM12_20665) yccS 3915422..3917584 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIM12_RS20950 (KIM12_20670) sxy/tfoX 3917547..3918176 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM12_RS20955 (KIM12_20675) sulA 3918395..3918904 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM12_RS20960 (KIM12_20680) ompA 3919261..3920301 (+) 1041 WP_000750416.1 porin OmpA -
  KIM12_RS20965 (KIM12_20685) matP 3920376..3920828 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM12_RS20970 (KIM12_20690) ycbZ 3921014..3922774 (+) 1761 WP_000156528.1 AAA family ATPase -
  KIM12_RS20975 (KIM12_20695) fabA 3922843..3923361 (+) 519 WP_000227927.1 bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase -
  KIM12_RS20980 (KIM12_20700) rmf 3923431..3923598 (-) 168 WP_000828648.1 ribosome modulation factor -
  KIM12_RS20985 (KIM12_20705) pqiC 3923854..3924417 (-) 564 WP_000759122.1 membrane integrity-associated transporter subunit PqiC -
  KIM12_RS20990 (KIM12_20710) pqiB 3924414..3926054 (-) 1641 WP_000445533.1 intermembrane transport protein PqiB -
  KIM12_RS20995 (KIM12_20715) pqiA 3926059..3927312 (-) 1254 WP_000333176.1 membrane integrity-associated transporter subunit PqiA -
  KIM12_RS21000 (KIM12_20720) uup 3927442..3929349 (-) 1908 WP_000053122.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566766 KIM12_RS20950 WP_000839153.1 3917547..3918176(-) (sxy/tfoX) [Escherichia coli strain 10_253]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566766 KIM12_RS20950 WP_000839153.1 3917547..3918176(-) (sxy/tfoX) [Escherichia coli strain 10_253]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1