Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM21_RS09955 Genome accession   NZ_CP074866
Coordinates   2032841..2033470 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2013C_3653     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2027841..2038470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM21_RS09935 (KIM21_09800) ycbZ 2028243..2030003 (-) 1761 WP_032344991.1 AAA family ATPase -
  KIM21_RS09940 (KIM21_09805) matP 2030189..2030641 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM21_RS09945 (KIM21_09810) ompA 2030716..2031756 (-) 1041 WP_000750416.1 porin OmpA -
  KIM21_RS09950 (KIM21_09815) sulA 2032113..2032622 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM21_RS09955 (KIM21_09820) sxy/tfoX 2032841..2033470 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM21_RS09960 (KIM21_09825) yccS 2033433..2035595 (-) 2163 WP_000875023.1 YccS family putative transporter -
  KIM21_RS09965 (KIM21_09830) yccF 2035605..2036051 (-) 447 WP_001261235.1 YccF domain-containing protein -
  KIM21_RS09970 (KIM21_09835) helD 2036174..2038228 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=566548 KIM21_RS09955 WP_000839153.1 2032841..2033470(+) (sxy/tfoX) [Escherichia coli strain 2013C_3653]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=566548 KIM21_RS09955 WP_000839153.1 2032841..2033470(+) (sxy/tfoX) [Escherichia coli strain 2013C_3653]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1